XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAG
ATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTA
CACGATAACAACCAGTTGTGCCAGCACCAATTGTTCAAACTGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGG
TGTGTGGGTTCATTTCTGGGTCTTCCATTCTATTCCATTGGTCTACTTGT
CTGTCTCTATACCAGTACCATGCAGTTTTTATCCCAATTGCTCTGGATCA
AAGCTTTAGGTCTGGATTGTTGATTTCGCCAGTTCTTTTTTCCTTGAAAA
TACTTTTTGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAACGCCTAGAGAAAGAGCAATTAGCTGTACTTAAG
GTGACATCAGTAGTACTATAAAATATAGGTTATATTCAGGCACTTCTATA
TGACAGTTCTGCTCATTGAGATTAATTCTGAAAATAAATTCTTTTTTAAA
AATACAGAAATATGATATTCTGAAGACTGTAACAGTAGTTGCTTGTGATA
GTGGTAACAGCTGATGTCTAGCAGCTACAGAATACTTAAATGGTCAAAGA
AATGTTACACAACAAGTGAACAATAGAGAGGGATAAGGTATGAGAGAAGG
ATTCTTACCCACTAATATTCTAATTTAAATTATGATTTCAGGTTTGACAT
GTGTAGATCATAAAATGTACATATATTTGAGTGAAAGGGAATATGCAAAA
ATGAACATATACATTAGAGAAGGCAATTTTGTTTCTTCTAATGGTGGTCA
TAAATGTTAGGCAGCAATTGATATTGGACCTAGCAATAATGAAGTGATAT
GTCATATGCCACATTGTATCAGACAAATTTATATGTATGAGTTAGAATAT
ACTTGAGTTTCATGTTCCTATGCTACTAGGCAAATCAGTGCAATATTCTC
TTGTGTTTTCTCAGTTTCTTTTCCCTGTTTCTATTTCCTATCATTCTCAA
CTCA

Query= MSMg01no080_i17.g1 MSMg01no080_i17.g1 CHROMAT_FILE:
MSMg01no080_i17.g1 PHD_FILE: MSMg01no080_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:29 2005
         (508 letters)



>mm_chr1_66778042_66778950
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%), Gaps = 1/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacgcctagagaaag-agcaattagctgtacttaaggtgacatcagtagtactataaa 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaaacgcctagagaaagtagcaattagctgtacttaaggtgacatcagtagtactataaa 650

                                                                       
Query: 60  atataggttatattcaggcacttctatatgacagttctgctcattgagattaattctgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atataggttatattcaggcacttctatatgacagttctgctcattgagattaattctgaa 590

                                                                       
Query: 120 aataaattcttttttaaaaatacagaaatatgatattctgaagactgtaacagtagttgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aataaattcttttttaaaaatacagaaatatgatattctgaagactgtaacagtagttgc 530

                                                                       
Query: 180 ttgtgatagtggtaacagctgatgtctagcagctacagaatacttaaatggtcaaagaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttgtgatagtggtaacagctgatgtctagcagctacagaatacttaaatggtcaaagaaa 470

                                                                       
Query: 240 tgttacacaacaagtgaacaatagagagggataaggtatgagagaaggattcttacccac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgttacacaacaagtgaacaatagagagggataaggtatgagagaaggattcttacccac 410

                                                                       
Query: 300 taatattctaatttaaattatgatttcaggtttgacatgtgtagatcataaaatgtacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taatattctaatttaaattatgatttcaggtttgacatgtgtagatcataaaatgtacat 350

                                                                       
Query: 360 atatttgagtgaaagggaatatgcaaaaatgaacatatacattagagaaggcaattttgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatttgagtgaaagggaatatgcaaaaatgaacatatacattagagaaggcaattttgt 290

                                                                       
Query: 420 ttcttctaatggtggtcataaatgttaggcagcaattgatattggacctagcaataatga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttcttctaatggtggtcataaatgttaggcagcaattgatattggacctagcaataatga 230

                                        
Query: 480 agtgatatgtcatatgccacattgtatca 508
           |||||||||||||||||||||||||||||
Sbjct: 229 agtgatatgtcatatgccacattgtatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)