Query= MSMg01no080_k03.b1 MSMg01no080_k03.b1 CHROMAT_FILE:
MSMg01no080_k03.b1 PHD_FILE: MSMg01no080_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:36 2005
(527 letters)
>mm_chr1_40733708_40734635
Length = 928
Score = 884 bits (457), Expect = 0.0
Identities = 511/529 (96%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 1 gagtatgtcaccactatcattgtgatgaacgaatgggatgctgattgcttgtgagtggta 60
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 728 gagtatgtcatcactatcattgtgatgaacgaatgggatgctaactgcttgtgagtggta 669
Query: 61 gtggccccctggtgccacagcaggacgccagggctctctttacaggatagtcctagtgta 120
|||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||
Sbjct: 668 gtggccccctggtgccacagcagggcgccagtgctctctttccaggacagtcctagtgta 609
Query: 121 ggtctactaaactagcccagcctgagctagatctctgggcaggaacccgagaatgactcc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 608 ggtctactaaactagcccagcctgagctagatcgctgggcaggaacccgagaatgactcc 549
Query: 181 actagacaatgctggctccgggtctgcattccacaatacctaagaccagaagcactggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actagacaatgctggctccgggtctgcattccacaatacctaagaccagaagcactggga 489
Query: 241 tttaggattcctcca-ccatatttggggacacttgcatgaatgtaaagtggtgtttagta 299
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 tttaggattcctccacccatatttggggacacttgcatgaatgtaaagtgttgtttagta 429
Query: 300 tgcttgtgctgtcactgcgatccctgacattgggtcagttttccacttgtacactcttgt 359
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 tgcttgtgctgtcacttcgatccctgacattgggtcaattttccacttgtacactcttgt 369
Query: 360 cagcattcaaaacactacagcttttgtagggctttgttacaga-ttttaaagtagacatt 418
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||
Sbjct: 368 cagcattcaaaacactacagcttttttagggttttgttacagatttttaaa-tagacatt 310
Query: 419 caacctgtcctaccatgctctccacaaaccctgatgatcttgacatgttaagacatcacg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caacctgtcctaccatgctctccacaaaccctgatgatcttgacatgttaagacatcacg 250
Query: 479 ctattcacatttgtgaaatggtcacattttaaagtctactttttttgaa 527
||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 249 ctattcacatttgtgaaatggtcacattttaaagtctcccttttttgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_k03.g1 MSMg01no080_k03.g1 CHROMAT_FILE:
MSMg01no080_k03.g1 PHD_FILE: MSMg01no080_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:36 2005
(548 letters)
>mm_chr1_40571072_40572019
Length = 948
Score = 940 bits (486), Expect = 0.0
Identities = 534/550 (97%), Gaps = 4/550 (0%)
Strand = Plus / Plus
Query: 1 actttaggagaccacagtggcagtaactttgggcttaactttaaggtctatat-caagat 59
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct: 201 acttcaggagaccacactggcagtaactttgggcttaactttaaggtctatattca-gat 259
Query: 60 ctctgaggtttgataaagacactcccaacgcccaggcactctgaatgtacctcagcctga 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctgaggtttgataaggacactcccaacgcccaggcactctgaatgtacctcagcctga 319
Query: 120 attaaaccactatcatgaacaatgcctggactgtccatttccccttcatcctcagtattc 179
||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 320 attaaaccattatcatgaacaatgcctggtctatccgtttccccttcatcctcagtattc 379
Query: 180 ctcctttaatcccatttagattttggattacctgg-ctgtccctgccacaccctgggagt 238
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 380 ctcctttaatcccatttagattttggattac-tgggctgtccctgtcacaccctgggagt 438
Query: 239 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaataggtggtaggaaaatct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaataggtggtaggaaaacct 498
Query: 299 caaatccttttggaatttgagctagttccacaactagcatgaatacatgattttatttat 358
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 caaatccttttgggatttgagctagttccacaattagcatgaatacatgattttatttat 558
Query: 359 ttatttatctatttatttattggcttagacctgccctcagttgctaactcttctcttaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttatttatctatttatttattggcttagacctgccctcagttgctaactcttctcttaga 618
Query: 419 ttttcaccttcacctcaggtcaacacttaccttgcccccactctgacatgaacttgggct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttcaccttcacctcaggtcaacacttaccttgcccccactctgacatgaacttgggct 678
Query: 479 ctgcttttattttatgctcttctccagccttgtgttgaaacaatccccatggtttgctgt 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 ctgcttttattttatgctcttctccagccttgtgctgaaacaatccccatggtttgctgt 738
Query: 539 gccccgctgc 548
||||||||||
Sbjct: 739 gccccgctgc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|