BAC Information

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BAC

Clone NameMSMg01-080K09
Chromosome1 (Build37)
Map Location 146,507,839 - 146,508,403
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc73, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21
Downstream geneRgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K09.T7 (MSMg01no080_k09.b1)MSMg01-080K09.TJ (MSMg01no080_k09.g1)
ACCAG301435AG301436
length707703
length of high quality
(start - end)
569 (42 - 610)379 (69 - 447)
definitionCHROMAT_FILE: MSMg01no080_k09.b1 PHD_FILE: MSMg01no080_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:37 2005CHROMAT_FILE: MSMg01no080_k09.g1 PHD_FILE: MSMg01no080_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCTTCACAGGAAATAAATATAAAGATGGGTCATATTCGCCAGTCATC
AGATTACTTATCACTGGAACACAACACAACCATTTACCATGCTTTTTAAT
TTTATGAATAAGTTTAAATATAAGTCTAAATATTAAAAGCTACATTCTCC
CACAACCTTCCATGTACAGATTGGATGCTCTGCCCTTTCTATCATGGGCT
GATGACAACCAAAGGACCTTGATTTGCTCTTGTGGCAGAAATTCCATTAA
GAAAAGACAAAGAAGGAATATCATAGGCTACTGCTGTGCAACATGTACTG
AATAGTGGATCAATGTGTTGATTAGAGAGTGAGAAAATTTATAATAAAAG
AAAGCTCTGAGAACCTCCAGAAAGGAGATACCTTAATTTGAAATAGTGTG
TGTGGGAAACAAGCATGATGAGGTAGGAAACTTCATATACACCAAGGGAA
AATCCACCAAAAGAAAGTTTCAATTCTGAACATCTATGCCTCAAATGCAG
CAGCACCCACATTCATAAAAGAAACATTACTGAAGCATACAACACATGAT
TGCACTCCACACCATAAAAGTGGGAGACTTCAAAACCCTACTCTCACTAA
TGGACAGGTCATTCAAATACAAACTAAACAGAGACCCCATGAACTCTAAT
AAATGTT
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTTTGTATGGATATCATATTTTGATTATCT
ATCCATGCATTTATGTTTATAAATAGATTGTTTCCATGTCCTACCTATTG
TGAATAGGGCAGCTATGAACAGGGATGAACACTTGTTTTTATAAGTGGAA
AAATCATAAGGATATGTGGACAGGAATATAAAGCTCTGTCATATGATGTA
TGCATTTCTAGGGTTTTGGTCAAAACTGATTTCTGTAGTAGCAGTACAAT
TTACATTCCCATCAACAGCGAATAAATGTTCTTTTCTTCATATTGTTGGC
ACTGTTTTTTATCTTATGATTTATAAATCTTAGCCATTTTGACTGGGGTT
ATACAAAATCTCTAAAAGCAGTTTTGTTTTGCATTTATCTAGCGGCCAAA
GATTGTGAATAGCCTATTAACTCAGTTGCTTGCTTTCTTATTTACTTTTT
CCGGTGCGTTTGCGTATACTCATAACAAACCGTTGCCAGATGTACTGAAT
GTGTAGATTTCTCATCATTCCGCATTCCATTTCCTAACTCCACGAACATC
TCTCCTCGCCGCATATAATAATTATCCCACCACGTTTCCCTCCCGTTCTA
TTGTCCCCAGACTCCCGTTCACTTAAGATTATGCCCATCCTCCTTAACTC
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k09.b1 MSMg01no080_k09.b1 CHROMAT_FILE:
MSMg01no080_k09.b1 PHD_FILE: MSMg01no080_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:37 2005
         (569 letters)



>mm_chr1_146507636_146508604
          Length = 969

 Score = 1056 bits (546), Expect = 0.0
 Identities = 561/566 (99%), Gaps = 1/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaccttcacaggaaataaatataaagatgggtcatattcgccagtcatcagat 63
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattccaccttcagaggaaataaatataaagatgggtcatattctccagtcatcagat 263

                                                                       
Query: 64  tacttatcactggaacacaacacaaccatttaccatgctttttaattttatgaataagtt 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacttatccctggaacacaacacaaccatttaccatgctttttaattttatgaataagtt 323

                                                                       
Query: 124 taaatataagtctaaatattaaaagctacattctcccacaaccttccatgtacagattgg 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 taaatataagtctaaatattaaaagctacattctaccacaaccttccatgtacagattgg 383

                                                                       
Query: 184 atgctctgccctttctatcatgggctgatgacaaccaaaggaccttgatttgctcttgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgctctgccctttctatcatgggctgatgacaaccaaaggaccttgatttgctcttgtg 443

                                                                       
Query: 244 gcagaaattccattaagaaaagacaaagaaggaatatcataggctactgctgtgcaacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagaaattccattaagaaaagacaaagaaggaatatcataggctactgctgtgcaacat 503

                                                                       
Query: 304 gtactgaatagtggatcaatgtgttgattagagagtgagaaaatttataataaaagaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtactgaatagtggatcaatgtgttgattagagagtgagaaaatttataataaaagaaag 563

                                                                       
Query: 364 ctctgagaacctccagaaaggagataccttaatttgaaatagtgtgtgtgggaaacaagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctctgagaacctccagaaaggagataccttaatttgaaatagtgtgtgtgggaaacaagc 623

                                                                       
Query: 424 atgatgaggtaggaaacttcatatacaccaagggaaaatccaccaaaagaaagtttcaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgatgaggtaggaaacttcatatacaccaagggaaaatccaccaaaagaaagtttcaat 683

                                                                       
Query: 484 tctgaacatctatgcctcaaatgcagcagcacccacattcataaaagaaacattactgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctgaacatctatgcctcaaatgcagcagcacccacattcataaaagaaacattactgaa 743

                                     
Query: 544 gcatacaacacatgattgcactccac 569
           |||||||||||||| |||||||||||
Sbjct: 744 gcatacaacacatg-ttgcactccac 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)