BAC Information

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BAC

Clone NameMSMg01-080K14
Chromosome1 (Build37)
Map Location 40,322,717 - 40,322,942
singlet/doubletsinglet
Overlap geneIl1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K14.T7 (MSMg01no080_k14.b1)MSMg01-080K14.TJ (MSMg01no080_k14.g1)
ACCAG301445AG301446
length707709
length of high quality
(start - end)
228 (37 - 264)342 (67 - 408)
definitionCHROMAT_FILE: MSMg01no080_k14.b1 PHD_FILE: MSMg01no080_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005CHROMAT_FILE: MSMg01no080_k14.g1 PHD_FILE: MSMg01no080_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAACGACTCCTATTTCCAGAGGATCCGCGGAATTCTCCT
TTGCTCCCAAATCCTACAATTAATTGGGATATGATAAGCGGACCTGTTTT
TCAGCCTGGTGGACAGCAGCAAAGCAACCAAGTAAAAAGCCTATGAACTA
TCAACTCTTCACCAGTGCTCTTTAACTCCTCCTACCTATAAAGGCTGCGG
GCCTTTATACCAAAAGAGGAAATCAAGGTATTGCAAACTTAATGACTCGG
CTAAGTGCTCAAAGCCAGCTCGAGGCACACAGTACTGGGCTCCAGTTGTG
CTGAGCACAGAATTGTGTTTTCCTCAGGATCTGATACCCCATGGGTCACC
AGTTCGGTTCTTGTTAGGTGGCACAATCTGGTTGCGATGTACAGGTGAGT
TGACCCACCCTTTTTTGTTTTGCCCGTTAATTCACACATTGTTCTGAGCA
GCCAAGTTATCCGTTAACCCAAGTTATTCTTCCCGCACCCTGCCCTTTCC
GTCCTGAATCCCTGTATTTTGTATTTGTCATTCCGGAAACTTCCCCCCCC
CCTCTTAGTTCCCCATATTTTGTCTTACTTCACCTTTGTACCTTTCCTTG
CCCTTTTTTTTCCCTTTTTTTTTTTTTCCCTCTCCTTTCCCCCCCCCTTT
TTTTCTCTCACTTCCCCTTCCCCCTTTCCTTTTTTTTTTCTCTCCTTCCC
TCTTTTA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGG
CGGTTCCTCAGAAATCTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTACCTCCATAGCAGTATTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAACATGTGGCCACA
TCTACACAATGGAGCACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGTAGGGTATCATCCTGAGTGAGGTAAC
TTTTTCCCATGGAATTCCCCCAATATGTACTCACTGATAAGTGTATATTA
TCCTCAAACCTAATATACCCTATTATTTTCACTCCTCTTCCTATTTCCCG
TAATTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k14.b1 MSMg01no080_k14.b1 CHROMAT_FILE:
MSMg01no080_k14.b1 PHD_FILE: MSMg01no080_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:38 2005
         (228 letters)



>mm_chr1_40322514_40323142
          Length = 629

 Score =  385 bits (199), Expect = e-111
 Identities = 219/229 (95%), Gaps = 7/229 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctttgctcc----caaatcctacaattaattgggatatgataagcggacct 59
           |||||||||||||||       ||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattctcctttgc---agagcaaatcctacaattaattgggatatgataaggggacct 260

                                                                       
Query: 60  gtttttcagcctggtggacagcagcaaagcaaccaagtaaaaagcctatgaactatcaac 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttttcagcctggtggacagcagtaaagcaaccaagtaaaaagcctatgaactatcaac 320

                                                                       
Query: 120 tcttcaccagtgctctttaactcctcctacctataaaggctgcgggcctttataccaaaa 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcaccagagctctttaactcctcctacctataaaggctgcgggcctttataccaaaa 380

                                                            
Query: 180 gaggaaatcaaggtattgcaaacttaatgactcggctaagtgctcaaag 228
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaaatcaaggtattgcaaacttaatgactcggctaagtgctcaaag 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 629
Length adjustment: 9
Effective length of query: 219
Effective length of database: 620
Effective search space:   135780
Effective search space used:   135780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)