NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGCTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCAAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACAAAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACAATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
CGTAGAAAAGCTTTAGGCCTGGAATGGTGATTCCGN

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTTGCAGACCAGGCTGGCCTTGAACTC
AGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGC
CACCATGCCCAGCTGGTTTCTGTCTTTTTATAAGACACAATAATCCGGAA
AATGTTAAGGATCCAGGGCAGTAAAACAGCACATGAAGCCTGTGGCAGGC
ATGTCACAGAAGGAAACAGAAGGGAGAAAAAAGAAAGCTGCTGCTTTGTG
AATTGTGATGAAAAGATATAGGCATACCACGCAGAAGGAAGCTAAATAGC
CACAATGCAGAGAGCATGGACTCTAGGAAAAACTATATTTCTCTCCTTTC
TTTAGTATGGCTTAATGTGGACCTGCCGTACGGTTGGTTTCAAGCCAACT
GATGGATTTGTCTGACTGGAATGTTAACTGTCAGCCCAGAACAGAGATTT
CATTGTGTTGACCAGAAAGAAACAGTTGTTTGTTTTCTCCCAATGGGCCT
TTGCTGCTAGATGTAACATATTCATATATACATATTTTTATAATGAGTCA
AAAATAGTGAATATGTAGCATAATGCTTAAGAATGAATGACATTATGAAA
ATGACAAACAAACAAGCATTGACATAAAGTTGCTTCA

Query= MSMg01no080_m05.g1 MSMg01no080_m05.g1 CHROMAT_FILE:
MSMg01no080_m05.g1 PHD_FILE: MSMg01no080_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
         (557 letters)



>mm_chr1_113586069_113587025
          Length = 957

 Score = 1038 bits (537), Expect = 0.0
 Identities = 554/563 (98%), Gaps = 6/563 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgcagaccaggctggccttgaactcagaaatcctc------ctgcctctgcctccc 54
           |||||| ||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 856 actttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctctgcctccc 797

                                                                       
Query: 55  gagtgctgggattaaaggcatgcgccaccatgcccagctggtttctgtctttttataaga 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gagtgctgggattaaaggcatgcgccaccatgcccagctggtttctgtctttttataaga 737

                                                                       
Query: 115 cacaataatccggaaaatgttaaggatccagggcagtaaaacagcacatgaagcctgtgg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cacaataatccggaaaatgttaaggatccagggcagtaaaacagcacatgaagcctgtgg 677

                                                                       
Query: 175 caggcatgtcacagaaggaaacagaagggagaaaaaagaaagctgctgctttgtgaattg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caggcatgtcacagaaggaaacagaagggagaaaaaagaaagctgctgctttgtgaattg 617

                                                                       
Query: 235 tgatgaaaagatataggcataccacgcagaaggaagctaaatagccacaatgcagagagc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgatgaaaagatataggcataccacgcagaaggaagctaaatagccacaatgcagagagc 557

                                                                       
Query: 295 atggactctaggaaaaactatatttctctcctttctttagtatggcttaatgtggacctg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atggactctaggaaaaactatatttctctcctttctttagtatggcttaatgtggacctg 497

                                                                       
Query: 355 ccgtacggttggtttcaagccaactgatggatttgtctgactggaatgttaactgtcagc 414
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 ccgtacggttggtttcaagccaactgatggatctgtctgactggaatgttaactgtcagc 437

                                                                       
Query: 415 ccagaacagagatttcattgtgttgaccagaaagaaacagttgtttgttttctcccaatg 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 ccagaacagagatttcattgtgttgaccagaaagaaacagttgtttgttttctcccaaag 377

                                                                       
Query: 475 ggcctttgctgctagatgtaacatattcatatatacatatttttataatgagtcaaaaat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggcctttgctgctagatgtaacatattcatatatacatatttttataatgagtcaaaaat 317

                                  
Query: 535 agtgaatatgtagcataatgctt 557
           |||||||||||||||||||||||
Sbjct: 316 agtgaatatgtagcataatgctt 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)