BAC Information

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BAC

Clone NameMSMg01-080M08
Chromosome1 (Build37)
Map Location 77,148,809 - 77,148,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneEpha4, LOC100039330, Pax3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080M08.T7 (MSMg01no080_m08.b1)MSMg01-080M08.TJ (MSMg01no080_m08.g1)
ACCAG301528AG301529
length742693
length of high quality
(start - end)
138 (41 - 178)342 (71 - 412)
definitionCHROMAT_FILE: MSMg01no080_m08.b1 PHD_FILE: MSMg01no080_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:47 2005CHROMAT_FILE: MSMg01no080_m08.g1 PHD_FILE: MSMg01no080_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATTC
ATGCTTTTATCCGAACCATCATCATTTAGTGATGGAATCCAGGTAGCCTC
TTCCTGGAGATCTACTCTGTTGTGGTTGCTGTTGTTGTGCTGGGTTATGG
TTGGTCAGGGACAAACTCACAAATGAACGCAGCTCCTTGACACAGGAAAA
ACTTACTTTGCGCTACACAACAGTCCACGGCACCTCATTGCAGCTTACTC
TGCAATAGGACTTGTATGCGCATTATATTTGCTATTCACCTTCCTCACCA
TTTTTCCCCCCTTCCCTTTTTCTTTCCTTTCCCCACTATACCACCCTCAC
CCTTTTTTCTTTCCTTTTCATCTACAACTTTTCTTTCTTTCCACCCCACT
TTCTTTTCCCTTTTCCCCTCCCACCCTTCTTTTCCCCCTTATTTCCATCC
ACCACTATCTTACCCACATACCACTCCTTTTTTTCCCCCCCCCGCCCCCC
CCTTACCCTACACTATATCCCCACTTTACTCATCCTTTCATATTCCCCAT
ACCTTCCCCCCCAACCTTCTAATCCTTACGCCTTTTTTTTCTCTTTTTGT
CCTCCTTCATCCTTTTCCTTCCCCTTTTTTCTACCCTTATTTTTTTTTTT
CCCTCCCCCCTTTTCCCCCCCCCATTTTTTTCTTCCCCACCTTCCCCTTC
CCTCCTTTTTCCTTTTTTTCTTTTCTCTCCTTCCCCCCTTTG
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCTCATTTTTAATG
GGGATATTTGAATTTCTGGGGGCCAGCTTCTTGAGCTCTTTGCATATATT
GGATATTAGTCGCTTATCAGATTTAGGATTGGTAGAAATCCTTTCCCAAT
CTGTTGTTAGTCTTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAA
GCTTTACAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCAC
AAGCCATTGCTGTTCTGTTTAGGAATTTTTCTGCTGTGCCTATATCTTCA
AGGCTTTTCCACACTTTCTCCTATATTAATATTAATTTCAGTTTCTCTGG
TTTTATGTGGAGCCCTTTGATCCACTTAGACTTGAGCTTTGTACTAGGAG
ATAACAATGGATCTATTCACATTCTTCTACATGTATCCCGTCAGTTGTGT
CAGCACCATTTGCCGAGTCCTTATTCGGTCTTCAGTGCAATGAGAGGCCC
ATTGCTCGTGTATACTTTATTCGTTTCATTTCCCGGTTTTGCCTGCCTCT
TTAAGTCCGTATTTTATGTTTCCCCTCTTTTTCTTTTTTTTTCTTCTCCT
CCCCCCCTTTCTATTCCCCCCCCTCTCTTTTCCCCTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_m08.b1 MSMg01no080_m08.b1 CHROMAT_FILE:
MSMg01no080_m08.b1 PHD_FILE: MSMg01no080_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:47 2005
         (138 letters)



>mm_chr1_77148605_77149143
          Length = 539

 Score =  236 bits (122), Expect = 4e-67
 Identities = 131/134 (97%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcttttatc-cgaaccatcatcatttagtgatggaatccaggtagcctcttc 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaattcatgcttttatcaagaaccatcatcatttagtgatggaatccaggtagcctcttc 279

                                                                       
Query: 64  ctggagatctactctgttgtggttgctgttgttgtgctgggttatggttggtcagggaca 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 ctggagatctactctgttgtggttgctgttgttgtgttgggttatggttggtcagggaca 219

                         
Query: 124 aactcacaaatgaa 137
           ||||||||||||||
Sbjct: 218 aactcacaaatgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 539
Length adjustment: 8
Effective length of query: 130
Effective length of database: 531
Effective search space:    69030
Effective search space used:    69030
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)