BAC Information

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BAC

Clone NameMSMg01-080N12
Chromosome1 (Build37)
Map Location 170,920,578 - 170,920,806
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080N12.T7 (MSMg01no080_n12.b1)MSMg01-080N12.TJ (MSMg01no080_n12.g1)
ACCAG301584AG301585
length685686
length of high quality
(start - end)
323 (37 - 359)229 (72 - 300)
definitionCHROMAT_FILE: MSMg01no080_n12.b1 PHD_FILE: MSMg01no080_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:52 2005CHROMAT_FILE: MSMg01no080_n12.g1 PHD_FILE: MSMg01no080_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATTCCAAGAGGATCCGCGGAATT
CTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACTGAGCAAGCCATTGCTGTTCTGTT
CAGGAATCTTTCTCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGCCTCTGGTTTTATGTGAAGTTCCTTGATCCAA
TAGATTTGACCTTAGTACTAGGAGATAAGTATGGATCAATTCGCATTCTT
CTACATGATAACAACCTGTTGTGCCAGCACCAATTGTTGATAATGCTGTC
TTTCTTCCTCCGTATGGTTTTATCTCCCTTGTCCAAGATCTAGTGACCAT
ATGTGTGCGGGTTCACTACCGGTTCTCCAATTCTATTCCATTGTCCTATT
TGCCTGTCCTCTTTTTTTTACCCTGCCGTTTCTACCTAATTTTTCTGTTT
CACATTTTTCATTCTCTTATGCTCCTTCCCTTTTT
AATATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAATCCCATTTTGTAACTGAACTGTA
GATGACTTTAACCTTGGACAGGATCCCCTTGGACCATAAATGTTGTATAT
GACCTGCCAGTTTCATTGTCTTATTTTATGTGATGTACTTCCCTTAAGTT
TTATGCAAACACAGAGAAGTCAATATCCCTACTTCAGCATGAAGGAAAGT
GCTCTGGCCACTTCTACACAGCTCTGTCAGGAGAATAGAAAAGGCAGACT
CATATCAGGAAAGTATCTGAAGCAGAGAATGAATAAGCAAGGCTACTGCC
TGCTGGTGATCAGACTCGGGGAAGTCCCCTTTGGTTCATAAGCACACTAC
CTGTAGGCCGCTGTGATGGGAAGGGGAAACCCAGGCATGCTCTTGAGCTT
CATACTGGTAAAGAAACAAAACCTCGACAATCGATCGATGCTTACCAAGT
CTTTATTTTTGTCCTAAGTGTTCTTTCCACAATTCCTGGTCACTCTACTA
TTTTAGCCCAGCTTACACCTGACTGCACATGTATTCCACTATCTCAACCA
TAAAGCGGAAATAGTAACTTACTCCTTGATGTTTCTTGACGCACATGTGT
GTTTCAAGCTACACCCATCATCTCTGTTATCCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_n12.g1 MSMg01no080_n12.g1 CHROMAT_FILE:
MSMg01no080_n12.g1 PHD_FILE: MSMg01no080_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:52 2005
         (229 letters)



>mm_chr1_170920378_170921006
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaatcccattttgtaactgaactgtagatgactttaaccttggacaggatccccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaatcccattttgtaactgaactgtagatgactttaaccttggacaggatccccttg 260

                                                                       
Query: 61  gaccataaatgttgtatatgacctgccagtttcattgtcttattttatgtgatgtacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccataaatgttgtatatgacctgccagtttcattgtcttattttatgtgatgtacttc 320

                                                                       
Query: 121 ccttaagttttatgcaaacacagagaagtcaatatccctacttcagcatgaaggaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaagttttatgcaaacacagagaagtcaatatccctacttcagcatgaaggaaagtg 380

                                                            
Query: 181 ctctggccacttctacacagctctgtcaggagaatagaaaaggcagact 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggccacttctacacagctctgtcaggagaatagaaaaggcagact 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)