BAC Information

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BAC

Clone NameMSMg01-081A07
Chromosome1 (Build37)
Map Location 41,518,469 - 41,518,954
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081A07.T7 (MSMg01no081_a07.b1)MSMg01-081A07.TJ (MSMg01no081_a07.g1)
ACCAG301718AG301719
length699699
length of high quality
(start - end)
581 (41 - 621)577 (70 - 646)
definitionCHROMAT_FILE: MSMg01no081_a07.b1 PHD_FILE: MSMg01no081_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:05 2005CHROMAT_FILE: MSMg01no081_a07.g1 PHD_FILE: MSMg01no081_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCACCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACAGGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGTAGTTTTTATCACAATTTGCTCTGT
ATTAAAGCTTTAGGTCTGGCCTGGTGATTCCGCCAGACAGTCTTTTATT
TGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTCTACTTTTTGCCTCTGCATATGGCTAG
TTATTGATTGACAGTAATGTGGGAGAATGAGGGATTTTTAGCAAGGCAGG
ACACAGGGCTCTACACATGAGCTCAGTGTGCCCTTGACAGCTAGCTTCAT
GTGAGTTTGACTCAAGCAAAATGTTTATTCTTGACACATTCTTAGAAAGG
GGTTGTTGGAAGGACAGTTGCCTCTCAACCAGTAAAGGTCAAATCATGGC
AATATGAAGAAAAAACAAACATGAATTTGCTGTTTACTAAATACAGAAAT
AGCTGTTTTTATTTATTGTAATATATTGTAAATATTATATTAGTTCTGGT
ACATGGAAAGGAAAGCTTCAAGTCTACTGTGGTATTAATTTTTTCATTTC
AAAAAAATGCAATTTCTAATGAGATTTATTAACTCTGGGTTCTACCTGCC
ATCATCTGTATATGACTCTGAGACAGAAAATTATCAGTATCACAGATTCT
TCAATTGTAATATACAAATTATAAGAATATCTAAATTTAATGTGGTTGAA
TATAAATTTTCAAGCATGTAACATGATTATGAAAATATTTGCTATAAACC
AGCAAGATTGTGCAGTGGGCATGGAACACTGCTGAGTTCTAGTCCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_a07.g1 MSMg01no081_a07.g1 CHROMAT_FILE:
MSMg01no081_a07.g1 PHD_FILE: MSMg01no081_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:05 2005
         (577 letters)



>mm_chr1_41518469_41519445
          Length = 977

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%), Gaps = 1/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctactttttgcctctgcatatggctagttattgattgacagtaatgtgggagaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcctctactttttgcctctgcatatggctagttattgattgacagtaatgtgggagaatg 427

                                                                       
Query: 61  agggatttttagcaaggcaggacacagggctctacacatgagctcagtgtgcccttgaca 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 426 agggatttttagcaaggcaggacacagggctctacacatgacctcagtgtgcccttgaca 367

                                                                       
Query: 121 gctagcttcatgtgagtttgactcaagcaaaatgtttattcttgacacattcttagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gctagcttcatgtgagtttgactcaagcaaaatgtttattcttgacacattcttagaaag 307

                                                                       
Query: 181 gggttgttggaaggacagttgcctctcaaccagtaaaggtcaaatcatggcaatatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggttgttggaaggacagttgcctctcaaccagtaaaggtcaaatcatggcaatatgaag 247

                                                                       
Query: 241 aaaaaacaaacatgaatttgctgtttactaaatacagaaatagctgtttttatttattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaaaacaaacatgaatttgctgtttactaaatacagaaatagctgtttttatttattgt 187

                                                                       
Query: 301 aatatattgtaaatattatattagttctggtacatggaaaggaaagcttcaagtctactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aatatattgtaaatattatattagttctggtacatggaaaggaaagcttcaagtctactg 127

                                                                       
Query: 361 tggtattaattttttcatttcaaaaaaatgcaatttctaatgagatttattaactctggg 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tggtattaattttttcatttc-aaaaaatgcaatttctaatgagatttattaactctggg 68

                                                                       
Query: 421 ttctacctgccatcatctgtatatgactctgagacagaaaattatcagtatcacagattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttctacctgccatcatctgtatatgactctgagacagaaaattatcagtatcacagattc 8

                  
Query: 481 ttcaatt 487
           |||||||
Sbjct: 7   ttcaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)