BAC Information

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BAC

Clone NameMSMg01-081F19
Chromosome1 (Build37)
Map Location 69,374,263 - 69,374,514
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081F19.T7 (MSMg01no081_f19.b1)MSMg01-081F19.TJ (MSMg01no081_f19.g1)
ACCAG301982AG301983
length729728
length of high quality
(start - end)
253 (68 - 320)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no081_f19.b1 PHD_FILE: MSMg01no081_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:32 2005CHROMAT_FILE: MSMg01no081_f19.g1 PHD_FILE: MSMg01no081_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGCACACGTAAGCAGATGTGTAATGAGGTAAGACCTATGATA
GGCTAACTCTGAAATCCCACACGCTTATCTGATAAACAGAGATGTTAACA
CTTACTTTGGTGAGTAGCTGAGATTAAATATGACACTGAAGTGTCTGGCA
CAGGAGAAAAGTAAGTAAAGAAAATGAAGCAAGGTAGAGTTGGTGAGATG
CCTCAGTGGGTAAAGGGGATTGCTTTCAAGTCTAATGACCTGGGTTGTAC
TTTTGGGGCCCAGATATTGTAAGAAGAGAGTAGACTTCCGCATTGTTTTT
TCTCTGATGTCCACAGGTTGACATGTGTACAAGCTCCTGGATCTAATAAA
TGAATAAACTGTAATGGACAAAAAAGGTACAAGGTATGTTCCCATCGAAT
CTCTATCATAGTAAACGCTTGTAAACTTGATGTGTACATGACACAAAGGG
CCTGTATCTATTGTATGATCCCTGGAATACCATATGCAACTTATGGCAAC
TCAGACTTTTGATGACAGCTTTTGTCAGTATGTATTGGAGTTTCCTGAGC
CATATTCTGGAAGACAATGGTACTTGTTTTGTTTTTCTGTCAGAGATGAA
AGAGTATTTATACTGTTGGATAAATGGAAATTGTTTAATATCATGAAATA
CAGACTTACCTGAATTTGTCTGGGTTATT
AATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAAATTGCCCCAACAGGCAAGAA
GGACACATGCTCCACTATGTTCATAGCACCCTTATTTATAATACCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACTGAAAATG
TGTTACTTTTATACAATGGAGCACTACTCTCCTATTATTAATAATGAATT
TATGAAATTCCTAGCCTAATGAATGGACTTGTAGGGTCTCTTCCTGAGCG
AGTTAACACATTCACAAAAAACTCATACAATATGTAATATCTGATAATTG
GATATACCCCCCAAACCAATCATACCCCAAGAACATATATTTATTTCGTC
AACCTCTCTGACCTTCAAAGAAAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_f19.b1 MSMg01no081_f19.b1 CHROMAT_FILE:
MSMg01no081_f19.b1 PHD_FILE: MSMg01no081_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:32 2005
         (253 letters)



>mm_chr1_69374146_69374798
          Length = 653

 Score =  472 bits (244), Expect = e-138
 Identities = 250/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcagatgtgtaatgaggtaagacctatgataggctaactctgaaatcccacacgctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagcagatgtgtaatgaggtaagacctatgataggctaactctgaaatcccacacgctta 310

                                                                       
Query: 61  tctgataaacagagatgttaacacttactttggtgagtagctgagattaaatatgacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctgataaacagagatgttaacacttactttggtgagtagctgagattaaatatgacact 250

                                                                       
Query: 121 gaagtgtctggcacaggagaaaagtaagtaaagaaaatgaagcaaggtagagttggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaagtgtctggcacaggagaaaagtaagtaaagaaaatgaagcaaggtagagttggtgag 190

                                                                       
Query: 181 atgcctcagtgggtaaaggggattgctttcaagtctaatgacctgggttgtacttttggg 240
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 189 atgcctcagtgggtaaaggggattgctgtcaagtctaatgacctggattgtacttttggg 130

                       
Query: 241 gcccagatattg 252
           ||||||||||||
Sbjct: 129 gcccagatattg 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)