Query= MSMg01no081_i06.b1 MSMg01no081_i06.b1 CHROMAT_FILE:
MSMg01no081_i06.b1 PHD_FILE: MSMg01no081_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:44 2005
(486 letters)
>mm_chr1_168312583_168313469
Length = 887
Score = 843 bits (436), Expect = 0.0
Identities = 474/490 (96%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgctcacagccaggactgactcctgcaaggtgccctctgacct------acac 57
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 794 ggaattctgctcacagggaggactgactcctgcaaggtgccctctgacctacacacacac 735
Query: 58 acacacacacgcacacatgctgtggcgtgtgcacccacatacatacatgcaaaacaaaag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acacacacacgcacacatgctgtggcgtgtgcacccacatacatacatgcaaaacaaaag 675
Query: 118 aaataagtagtgtaaaagaaaagaaaaagaaagcaggtccacctgtgactgtcacataga 177
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 674 aaataagtagtgtaaaagaaaagaaaaagaaaacaggtccacctgtgattgtcacataga 615
Query: 178 aagaaggacattttacttgtaacaaaaaccattcttttgttactagcaaatattcatttc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aagaaggacattttacttgtaacaaaaaccattcttttgttactagcaaatattcatttc 555
Query: 238 attatgaggaaatagtgttcaatgaagaaataatgcttagtttccagattggagatttac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attatgaggaaatagtgttcaatgaagaaataatgcttagtttccagattggagatttac 495
Query: 298 acttattttacaatcttatcaggagggacatttttaaagcacttacttcctcccaacagt 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 acttattttacaatcttatcaggagggacatttttaaagcacttacttcctcccaacact 435
Query: 358 ctaccaaacgggcactgagcg-ctctactgggtgctgttctactcagcacacatcccaag 416
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 ctaccaaacgggcgctgagcggctctactgggtgctgttctgctcagcacacatcccaag 375
Query: 417 cccaggcttctactgcctgacttgtcagcatccactgctcagctgtgtctcctaatgccg 476
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 374 cccaggcttctactgcctgacttcccagcatccactgctcagctgtgtctcctaatgccg 315
Query: 477 ccctctcctg 486
||||||||||
Sbjct: 314 ccctctcctg 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_i06.g1 MSMg01no081_i06.g1 CHROMAT_FILE:
MSMg01no081_i06.g1 PHD_FILE: MSMg01no081_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:45 2005
(547 letters)
>mm_chr1_168159795_168160744
Length = 950
Score = 915 bits (473), Expect = 0.0
Identities = 521/543 (95%), Gaps = 13/543 (2%)
Strand = Plus / Plus
Query: 1 acactggagccttgaaaagagtattcttattaaaatactcatctgtaatcaaactgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 acactggagccttgaaaagagtattcttattaaaatactcatctgcaatcaaactgaaaa 251
Query: 61 ca---------cttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 111
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagaagtaattcttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 311
Query: 112 gaagaaactacaacgaattacttgttggtaagacactacaaactagagatcatagccttc 171
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 312 gaagaaactacaacgaattacttgttggtaagacactgcaaactagagatcacagccttc 371
Query: 172 acactaaggcaaaactaagt-aaaaaaatcagaagacaagtcaaaac--agcacttacga 228
| |||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||| |
Sbjct: 372 atactaaggcaaaactaagtaaaaaaaaccagaagacaattcaaaacatagcacttacaa 431
Query: 229 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 491
Query: 289 gataacctattctaaataagaaattctaggctagtcaaggttgagactcccatcttttaa 348
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 gataacctattctaaataagaaattctaggctagtcaaggttgagacttccatcttttaa 551
Query: 349 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 611
Query: 409 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 671
Query: 469 tttacagatgatcccaatttatcaacaagggctttttgttttggtttttttctttgtttt 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 672 cttacagatgatcccaatttatcaacaagggctttttgttttggtttttttcttt-tttt 730
Query: 529 ttt 531
|||
Sbjct: 731 ttt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 950
Length adjustment: 10
Effective length of query: 537
Effective length of database: 940
Effective search space: 504780
Effective search space used: 504780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
