BAC Information

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BAC

Clone NameMSMg01-081K11
Chromosome1 (Build37)
Map Location 89,533,198 - 89,533,440
singlet/doubletsinglet
Overlap geneInpp5d
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081K11.T7 (MSMg01no081_k11.b1)MSMg01-081K11.TJ (MSMg01no081_k11.g1)
ACCAG302206AG302207
length705702
length of high quality
(start - end)
555 (38 - 592)244 (65 - 308)
definitionCHROMAT_FILE: MSMg01no081_k11.b1 PHD_FILE: MSMg01no081_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:56 2005CHROMAT_FILE: MSMg01no081_k11.g1 PHD_FILE: MSMg01no081_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGAATTCAT
TACTTTGCGATAGAGTCATGCTTACATACCTTTGGTTAGCTTATAACTCA
AAATCCTTCCATCTTAGCCTTTGAGTCAAAACTTTTTCTTTTCTTTTTCT
TGAGTCAGGCCTCACTATGTCACTCTGGCTAGCCTGGAACTCCCTACATA
GACCAGGCTGGTCTTTTACTCAGAGTCCATTCGCTTCTGCCTCCTGGGTG
CTGGAATTAGAGAAGTACAACACCACACCTGGCAAAACATTTTCTAAAAA
GATTTACTTTAAAATTGGTTATGTATATGAGCATTTTGTCTGCATGTATG
TGCATCATGAATTTGCCTGGTGCTTGCCTAGGCCTGAAAGGGGGCCCAGC
TCTCCGGAACTGGGATAGATGGTTGTGTGTGGACCTCTGTGTGGGTGCTA
AGAACTAATCCAGGTTCTTTCCAAGAATAGTGAGTGCTCCTAATCGCTAA
GCCACATCTCCAGCCACAACGTCGGCTTTTTAAAGATATTTATTTTATGT
GTATGCCATAGAACATGTCTGTGTACCACTTATATGTAGTACCTACTGAG
GTGCAGAACCTCCTAGAACCAGAGTTACAGTTGTGAACCCCCGTGTGGGT
GCTGTAATTCAAACCCAGATCCTCTACAATAGCATCCAGTGCTCCTGATC
ATTGA
TGTGTGTAGCCTGGCGGCGCCTGCTCCCAAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAGAAACCACATCAGTACTTCCAACAGCCACTTCCT
CCAGACGGTGGGACTCGAAGGGGGCCAGTTCCATCCAGGGTGTGGCAAAG
CTTCCCTCTAGGGGAAGGGTCTGCTCATACTGAGCTTCATGGGAGAGGCC
AGCGTGAACCACTGTGGGCTGGAGTAACGGCTGTACTGCATAGCATGGTG
GTCAGGCTGAGCACAGTTCATACTTTTTCTCGTGTGCGCATGAACACCAG
GATGGAATGCGGGGCGGATGGGAGGCAGGGCGGATGGAAGGTGTGGTCTA
GGGGTCAGGGAGTCCCTTTCCCAGCCCAGTCATTGGTGGGAAGCAACAGA
ACAAATCTGAGTACCCGCAAGCAAGCGCCCTTTTTTAAGCTTGGCAGGTG
TTCGTTGCCTGAATACTTTATGAGATGTGGACGCCACCAGCTTCTGGAGA
CATGGCTCAGGTGAGGTGGCTTACGCATGCAGCCGTAGCCTCTACTTTTT
TTTTTTTTTTTTCTAAGCCTAGGACTGTGTGAACTTTGCCTGGTGGCTTG
GAGTCCTTGGCAAGCGGCTTCCTGCTAGTAGCCAACTCCTCTTAGTTAAA
AGTTAGTCGGTACCTTTGGACCTTTCCCCCCTTTTGTGGTTCCTTCCGTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_k11.g1 MSMg01no081_k11.g1 CHROMAT_FILE:
MSMg01no081_k11.g1 PHD_FILE: MSMg01no081_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:56 2005
         (244 letters)



>mm_chr1_89532998_89533641
          Length = 644

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaccacatcagtacttccaacagccacttcctccagacggtgggactcgaaggggg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaaccacatcagtacttccaacagtcacttcctccagacggtgggactcgaaggggg 260

                                                                       
Query: 61  ccagttccatccagggtgtggcaaagcttccctctaggggaagggtctgctcatactgag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ccagttccatccagggtgtggcaaagcttccgtctaggggaagggtctgctcatactgag 320

                                                                       
Query: 121 cttcatgggagaggccagcgtgaaccactgtgggctggagtaacggctgtactgcatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcatgggagaggccagcgtgaaccactgtgggctggagtaacggctgtactgcatagc 380

                                                                       
Query: 181 atggtggtcaggctgagcacagttcatactttttctcgtgtgcgcatgaacaccaggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtggtcaggctgagcacagttcatactttttctcgtgtgcgcatgaacaccaggatg 440

              
Query: 241 gaa 243
           |||
Sbjct: 441 gaa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)