BAC Information

Click to search

BAC

Clone NameMSMg01-081L13
Chromosome1 (Build37)
Map Location 31,773,458 - 31,773,609
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L13.T7 (MSMg01no081_l13.b1)MSMg01-081L13.TJ (MSMg01no081_l13.g1)
ACCAG302258AG302259
length720724
length of high quality
(start - end)
360 (37 - 396)304 (74 - 377)
definitionCHROMAT_FILE: MSMg01no081_l13.b1 PHD_FILE: MSMg01no081_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:01 2005CHROMAT_FILE: MSMg01no081_l13.g1 PHD_FILE: MSMg01no081_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTTGCGGCGCTATACGACTCCTATTCCGAGAGGATCCGCGGAATT
CTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AATTCCACCTTCTTGAGTTCTATATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTTGATCCA
CTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCAATTCCCATTC
TTCTACACGATAATTACCTTTTGTGCCAGCACCTATTGTTGAATATGCTG
TCTTTCTTCCACTGTATGGATTTAGCTCCTCTTTCTAATATCATGTGACC
CTAAGATGTGTGTGTTTATCTCAGTGTCTTCAATTTTATTCCTTTGATCT
AATTGTCTGTATCTATACTAATAACTTTGCAACTTTATCATTATTGTTCT
GAATTATCAGCTTAAAATAATGCTTGATGTATTCATCTTAGTGTCTTTTA
TTCTTTGTATTTATCTTTTG
CATTACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAAAAATTCTTTTAGATTTTTAAGAA
AGAGAAACAGTACAAAATAGATTAAACAGAGGAATTGAAGATGATAATTG
AAATAAGAGACAGCACATTGAAGATGAATAGTGCTAAAATTGCAATTAAT
AATGCTTTTTATTTTGTTGTTTATAAAAATTTTTTAAAAATTCTCCTTCC
TTCTATGAGCTACACAGCTTTGGACTTATCTATGGTGACAAAGGACTGAA
GAAAAGACAGATGCACACATTGTTTAAAGAAACATTTAAATTATCTAGAA
TATATGTTTTTTCAGGTTTACTTTGAGAATGACAAACAAATTGGTTTTGA
ACATAGAAAACAATAGCCTACTATTCAATATGAGACCTTACATGAGCAGT
AATGCCTCCCATAACATGAAGTTCTTTATATAAATAAAAGGAAAACATCC
TAAATTGTAACATATTCAACTCATACCTTTAATATATTCCCCGGCATCCT
GACCTATGCAGATGCTTATGCCGGCAGCCAAACATTTAGACTGAGCACAG
CGACCCCACTGGACTAATTAGGTCCAGGACTGAAGCAGCTGAAGGGATCT
TACAACCCTTACGAAAAAACATATCCACCACCCACACCCCCACCTCTGAT
CTCCCATGGACTACACCACAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l13.g1 MSMg01no081_l13.g1 CHROMAT_FILE:
MSMg01no081_l13.g1 PHD_FILE: MSMg01no081_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:01 2005
         (304 letters)



>mm_chr1_31773258_31773961
          Length = 704

 Score =  271 bits (140), Expect = 4e-77
 Identities = 149/152 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaattcttttagatttttaagaaagagaaacagtacaaaatagattaaacagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaattcttttagatttttaagaaagagaaacagtacaaaatagattaaacagagga 260

                                                                       
Query: 61  attgaagatgataattgaaataagagacagcacattgaagatgaatagtgctaaaattgc 120
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaagattatatttgaaataagagacagcacattgaagatgaatagtgctaaaattgc 320

                                           
Query: 121 aattaataatgctttttattttgttgtttata 152
           ||||||||||| ||||||||||||||||||||
Sbjct: 321 aattaataatgttttttattttgttgtttata 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)