BAC Information

Click to search

BAC

Clone NameMSMg01-081M11
Chromosome1 (Build37)
Map Location 46,189,583 - 46,189,959
singlet/doubletsinglet
Overlap geneDnahc7b
Upstream geneLOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M11.T7 (MSMg01no081_m11.b1)MSMg01-081M11.TJ (MSMg01no081_m11.g1)
ACCAG302302AG302303
length704702
length of high quality
(start - end)
564 (62 - 625)377 (68 - 444)
definitionCHROMAT_FILE: MSMg01no081_m11.b1 PHD_FILE: MSMg01no081_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:05 2005CHROMAT_FILE: MSMg01no081_m11.g1 PHD_FILE: MSMg01no081_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:05 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGAATTCT
ATCAGTCCCCCGAAGAAGATCAAATATGCATACTCTTCAAACTATTCCAC
AAAGTAGAAACAGAAGGAACACTACCCAATTTGTTCTATGAAGCCACAGT
TATGCTGATACCAAAACCACACAAAGACCCAACAAAGAAAGAGAACGTCA
CACCAATTTCCCTTATGAATATCAATGTAAAACTCAATAAAATACTCATA
AACTGAATCCAAGAACACATCAAAATGATCATTCACCATGAATGTAGGTT
TCATCCCAGGGATGCCGGGATGGTTCCATATATGGTAATCCAACAATGTA
ATCCACTACATAAACAAACTCAAAGAGAAAAACCACATGATCCTCTCATT
AGATGCTGAAAAAGCAGTTGACAAAGTTCAACATCCCTTCTTGTTAAACG
TGTTGGGAAAGACCAGGAGTTCAAGGCCCATACCTAAACATAAAAGCAAC
ATACATCAAACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAAG
CAACCCCACTAAAATCAGGAACTAGAAAAGGCTGCCCACTCTCTCCCTAT
CCAATATAGTACTTAAGTTCTAGCTAGAGCAATTAGACTAAAAAAGGAGG
TCAAAGGGATTCAAATATGAAAGGAAAAAGTAAAACTATCACTATTTGCC
GATG
ATTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAATAAGTCTACAATGTGTGGCTATAAGACAA
AAATACACGACCAATCATGTCCCTATGCATAAGCAATGGATTGATTTACA
AACTATAATCTTCACAAGTAATAAGTAATAAATGTCTAGTCAAACTATGT
ATTTTTGAATTTAGCTAATTAGTTTCCTATAGAGCCAAGAGACTGGGTTT
ACGTTTCTCCCTATCTATAATAAATGAGTGATTTTTGTAGTGACTACATT
GACCATCTGCTTCACCTTTATTGGAATAAACTTTAACACATAGAGATATT
TTAAGCAACAAACAATGAATCTTATTTGCTAATTTTGTTAAAGATTATTA
TATGCAATAGAAACTCAGTTTGAATAACCCCAAATTGTTTAAGCCAGTAA
TATCAAGGAAGATAAGCAGATGGTAATGTGTACAACTCCTCTTTCCACAT
GAGTTCTTTTCTAATAAAGAGGAAGGCACAGCAATTATTTATACCTATTA
CCAGCCACAGAACTACTTGATGGCCAATAAGAGTTTAAAATATAAATATG
TCTTCTTGAAGTCTGTATGAGCATGTAATATTGATCACACACTCCGAACT
CCAGTCCCAATCATGTCAACTTCCTATAAAAGAAAGACTTTCACTAAAGC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m11.g1 MSMg01no081_m11.g1 CHROMAT_FILE:
MSMg01no081_m11.g1 PHD_FILE: MSMg01no081_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:05 2005
         (377 letters)



>mm_chr1_46189383_46190159
          Length = 777

 Score =  683 bits (353), Expect = 0.0
 Identities = 371/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaataagtctacaatgtgtggctataagacaaaaatacacgaccaatcatgtccctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agaataagtctacaatgtgtggctataagacaaaaatacacgaccaatcatgtccctatg 518

                                                                       
Query: 61  cataagcaatggattgatttacaaactataatcttcacaagtaataagtaataaatgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cataagcaatggattgatttacaaactataatcttcacaagtaataagtaataaatgtct 458

                                                                       
Query: 121 agtcaaactatgtatttttgaatttagctaattagtttcctatagagccaagagactggg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 457 agtcaaactatgtatttttgaatttagctaatcagtttcctatagagcccagagactggg 398

                                                                       
Query: 181 tttacgtttctccctatctataataaatgagtgatttttgtagtgactacattgaccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttacgtttctccctatctataataaatgagtgatttttgtagtgactacattgaccatc 338

                                                                       
Query: 241 tgcttcacctttattggaataaactttaacacatagagatattttaagcaacaaacaatg 300
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| 
Sbjct: 337 tgcttcacctttattggaataaactttaaaacacagagatattttaagcaacaaacaata 278

                                                                       
Query: 301 aatcttatttgctaattttgttaaagattattatatgcaatagaaactcagtttgaataa 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 aatcttatttgctaattttgttaaagattattatattcaatagaaactcagtttgaataa 218

                            
Query: 361 ccccaaattgtttaagc 377
           |||||||||||||||||
Sbjct: 217 ccccaaattgtttaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)