BAC Information

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BAC

Clone NameMSMg01-081O12
Chromosome1 (Build37)
Map Location 156,373,059 - 156,373,562
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O12.T7 (MSMg01no081_o12.b1)MSMg01-081O12.TJ (MSMg01no081_o12.g1)
ACCAG302400AG302401
length707706
length of high quality
(start - end)
509 (38 - 546)504 (65 - 568)
definitionCHROMAT_FILE: MSMg01no081_o12.b1 PHD_FILE: MSMg01no081_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:15 2005CHROMAT_FILE: MSMg01no081_o12.g1 PHD_FILE: MSMg01no081_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
ATCTACCTTGAGCACCACCTGAGTGTAATATGTAGACTTCGCAAATAGAA
ATGTAGGCCGCTCAGTTGTATTAGTTACTTCTCTGATTACTGTGACTCAG
TCAGTACCTAACAAGAAGTAACTTGAGGAAGCAGGTTTATTTCACCTTGT
ATTTTAAGAAGGAATAAAGGTCATCATGGTGGGGAAGATATGGTGGCAGA
AATGTAAGACATATGGTCACACTACATCTGTGTTGAGGAAATAGACAGAG
GATAGAAAGTTGGAGTGGGCTATGAAGCACCAAGCTCTGCCTTCTGTGAG
CCACTTCCTCCAATGATGCTCAACCTCCTAAAGTTTTTATACCCTCCCCA
AATATGCCACTAGCTGGGAACCAGGTGTTCAAACACATGAATCTATGGGG
GGGGCACATTTCACACTCACACCCCAGCACTGTTTAATTTAAATGCCAGA
TTTTAGATAGATAATGAATATCCCACACATTATTAAAAAAAAAACTGCAC
TAAACTTACTTAGTTGTACTAAAAACCTATTTCAGTTCTTTAAGCAAAAC
CCAAATTCCTCTGAGCCACCTATATTTTATCTGACAATTCTAACCATAAT
CCCACTGCTGCGGGGCATTTCTCAGACATGGAAGCGAACCGCACACCATG
TCTGTAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGAGTACTCCCATTTTGCTATCAATAACCCTCCT
TCTTAAATACCTTCAGACAGTGGGTAATTCCCCCATGATTCTACTGCCCT
CACTGGGTTGGGGAGGCCTCATAATTACTACCGTCAGCAACCCAAGATGA
ACTGCCTGGATATCAGAGGTATCCTCATCTTCCTATGAACCAGAGTATAT
CAGCCAGAAGGGTCAGCACTTAGAGACATGAAGCTGTGAACTAAATACTA
GAGCCTAGGTTCCCGTGGCCTCTATAGCCTTGCAGACTTAGAGGAGTAGA
GAACTAATAAGGGATAGAGACCATAGTCTTATCACCAAGTGAAGACAAAA
AGATAAATGATGAACAATGATTATCAGAAAATTCAGTAGACTAGGATAGG
TAGACAAAGAAGCCAGAGAGCCTAGACTCCAGTCTTGATCAGATACTTGC
CATCCTTGGTTCCCTATCAAAAGCACTATGAGGCAGAGGTAACCTGTGAG
AAACTTTCTTTTAGGCAAAGCTTGGAGAGTCCCTTAAAAGTAATTTTATT
TATGTTTTGTCCATCAAACTGAGCTACAACCTGGATATAATTGAAACTTC
ATATTCCATAAATGGGGTCAAACAGAGGACACTTTCTCGGGGAAACAGAC
AATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o12.g1 MSMg01no081_o12.g1 CHROMAT_FILE:
MSMg01no081_o12.g1 PHD_FILE: MSMg01no081_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:15 2005
         (504 letters)



>mm_chr1_156372859_156373762
          Length = 904

 Score =  967 bits (500), Expect = 0.0
 Identities = 503/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagtactcccattttgctatcaataaccctccttcttaaataccttcagacagtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagtactcccattttgctatcaataaccctccttcttaaataccttcagacagtggg 260

                                                                       
Query: 61  taattcccccatgattctactgccctcactgggttggggaggcctcataattactaccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattcccccatgattctactgccctcactgggttggggaggcctcataattactaccgt 320

                                                                       
Query: 121 cagcaacccaagatgaactgcctggatatcagaggtatcctcatcttcctatgaaccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcaacccaagatgaactgcctggatatcagaggtatcctcatcttcctatgaaccaga 380

                                                                       
Query: 181 gtatatcagccagaagggtcagcacttagagacatgaagctgtgaactaaatactagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatatcagccagaagggtcagcacttagagacatgaagctgtgaactaaatactagagc 440

                                                                       
Query: 241 ctaggttcccgtggcctctatagccttgcagacttagaggagtagagaactaataaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggttcccgtggcctctatagccttgcagacttagaggagtagagaactaataaggga 500

                                                                       
Query: 301 tagagaccatagtcttatcaccaagtgaagacaaaaagataaatgatgaacaatgattat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagaccatagtcttatcaccaagtgaagacaaaaagataaatgatgaacaatgattat 560

                                                                       
Query: 361 cagaaaattcagtagactaggataggtagacaaagaagccagagagcctagactccagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaaattcagtagactaggataggtagacaaagaagccagagagcctagactccagtc 620

                                                                       
Query: 421 ttgatcagatacttgccatccttggttccctatcaaaagcactatgaggcagaggtaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgatcagatacttgccatccttggttccctatcaaaagcactatgaggcagaggtaacc 680

                                   
Query: 481 tgtgagaaactttcttttaggcaa 504
           ||||||||||||||||||| ||||
Sbjct: 681 tgtgagaaactttcttttaagcaa 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)