Query= MSMg01no081_p03.b1 MSMg01no081_p03.b1 CHROMAT_FILE:
MSMg01no081_p03.b1 PHD_FILE: MSMg01no081_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:18 2005
(280 letters)
>mm_chr1_137677924_137678602
Length = 679
Score = 518 bits (268), Expect = e-151
Identities = 274/276 (99%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaacccggaacaatcttctatggttggggttttagcagtattagaaattgtctt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattcaaacccggaagaatcttctatggttggggttttagcagtattagaaattgtctt 420
Query: 65 cctgtccacactcgttccttttattaataaagctctaggcccaaagaggatggccagcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctgtccacactcgttccttttattaataaagctctaggcccaaagaggatggccagcca 360
Query: 125 cagacacttgaggcaatcccggcatgcattgcggggcttgggcatgtgtacagccccccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 cagacacttgaggcaatcccggcatgcattgcggggcttgggcatgtgtacag-cccccc 301
Query: 185 cccccataacagcgccctctgtttcatcaggtgcctggcttacctgcgttatttatacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccccataacagcgccctctgtttcatcaggtgcctggcttacctgcgttatttatacct 241
Query: 245 tcgaagctcccaaagtatttctctctcattgtttcc 280
||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcgaagctcccaaagtatttctctctcattgtttcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space: 181570
Effective search space used: 181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no081_p03.g1 MSMg01no081_p03.g1 CHROMAT_FILE:
MSMg01no081_p03.g1 PHD_FILE: MSMg01no081_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:18 2005
(251 letters)
>mm_chr1_137529363_137530013
Length = 651
Score = 485 bits (251), Expect = e-142
Identities = 251/251 (100%)
Strand = Plus / Plus
Query: 1 tttggcagtctaacccatgagggtacctctcaggcccaggtggtaacgatatgaggttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggcagtctaacccatgagggtacctctcaggcccaggtggtaacgatatgaggttgt 260
Query: 61 tcatattcccttggtgtgtccgaagccctggctaacttagggctagcatcagcgtcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatattcccttggtgtgtccgaagccctggctaacttagggctagcatcagcgtcagtg 320
Query: 121 ttggattacccccaaggagagaagaatatctgccgtcaggaagcatccaggttggaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggattacccccaaggagagaagaatatctgccgtcaggaagcatccaggttggaggac 380
Query: 181 acatgaaggtgcttctggggctttccagccttacgggagagatgaggtccacaaggcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgaaggtgcttctggggctttccagccttacgggagagatgaggtccacaaggcaga 440
Query: 241 cagacgcttga 251
|||||||||||
Sbjct: 441 cagacgcttga 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
