BAC Information

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BAC

Clone NameMSMg01-082A08
Chromosome1 (Build37)
Map Location 54,274,071 - 54,274,444
singlet/doubletsinglet
Overlap genenone
Upstream genePms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A08.T7 (MSMg01no082_a08.b1)MSMg01-082A08.TJ (MSMg01no082_a08.g1)
ACCAG302487AG302488
length745698
length of high quality
(start - end)
64 (152 - 215)375 (72 - 446)
definitionCHROMAT_FILE: MSMg01no082_a08.b1 PHD_FILE: MSMg01no082_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:24 2005CHROMAT_FILE: MSMg01no082_a08.g1 PHD_FILE: MSMg01no082_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTAGAAGATCCGC
GGAATTCCAGACCATTTCTCACTCCTTATACCCACCGATAAGTACAGCTT
TCAGCCATCATCAAGCTCACTTCTCTGCAACAGATAGAGAGCAGGTTGTG
GAGGCCTACTCCTAAATGTCACATCTATATATAATGCCTGCTCCTATGGC
TCAGAGGTCATTGAGGAAGAGAGAATAGAACGACTGTATTATCCATACCC
CACAGAAGAGAAGTGACTAACTTATATTATAACGTCAAAATTACATATAA
TAAGACCAGCCTACTCTGCACAGTATTACCTTGTTTCAAAAGCAAACATC
CCTGTATCCTTTGGCCCCAACCTTTCCCCCCCTAACTGTAGGGTGGCCCC
AGCCGCTCACATTACCGTACCATGCTTCCCCGCCTTCTCCCTTTTCCGAT
CTTGCGCTCCTCGTCCATTCTCTTCTTCACCTTTCCCTACCTCGTCTCGT
TCCTTCCCGGCCTCCCTTTCTTTTCCCCCCCACCATTTTTGCTCCCCTGC
CCTTGTCATCCCCTTCTTTTTTTCCCCTCCCCCCCCCTGTTTTTTCAGCC
CTTCTTCTCATTCATAACAAAACCACCTAACCACCCCTTCTGGCACGATA
ATTTTTATTTTCTTTTTCTCTTCTTCCCCTTCTCCCCTCTTTCCTTTCTC
CCCCCCTTCCCCCCTATCTCCCTCTTTGCGCCCCTTCTTTTCCCA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACATGGCCTTGGCAAGACCCTTTGTGA
TTCAATCACCTCTTTCTGGATCTAGCTGTGAACCAAGCCTTTAATACGGA
AACCATAAAGGCCATTTTATTTCTAAACCATAAGGTGCTCTTAATCTGGT
CAGAATCAGCGCAACCTAAGACGACCTTGTAGGCACCTCAGGAAAGGAGG
TTTTCCTTCTTATCCCTCTGTACTTAAGGACATTGGATATGAGGAAGGTG
GCATTGCTTTCGTCATCTTGCTTGGCTGATGATGCAGCACAAGAACTTAA
CTCAGGTTGCGCTTGATGCAAGTTTCAGTTATAGATGTGGGTTGGTTTAA
ATATGCTTGGCCCAGGGAGTGGCACTATTAGGAGGTATGGCCTTGCTGGA
GTGGGTGCGGCCTTATTGGAGGAATTGAAACCTTCCTCCTAGCTTCCTGG
AAGTCAGTCTTCTAGCAGCCGTTGGAACAAGAGGTAGAACTCTTAACTCC
TCCTGTATGCCTGCCTGGATGCTGCCATGCTTCCCACCATAATGATAATG
GACTAAACCTCTGAACCTGTAAGCAAGCTCCAATTAAATGTTTGCCCTTA
AAAGAGCTGCTGTGGTCATTGTCTCTTCACAGTACTGAAACCCTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a08.g1 MSMg01no082_a08.g1 CHROMAT_FILE:
MSMg01no082_a08.g1 PHD_FILE: MSMg01no082_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:24 2005
         (375 letters)



>mm_chr1_54273931_54274705
          Length = 775

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatggccttggcaagaccctttgtgattcaatcacctctttctggatctagctgtga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acacatggccttggcaagagcctttgtgattcaatcacctctttctggatctagctgtga 455

                                                                       
Query: 61  accaagcctttaatacggaaaccataaaggccattttatttctaaaccataaggtgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 accaagcctttaatacggaaaccataaaggccattttatttctaaaccataaggtgctct 395

                                                                       
Query: 121 taatctggtcagaatcagcgcaacctaagacgaccttgtaggcacctcaggaaaggaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taatctggtcagaatcagcgcaacctaagacgaccttgtaggcacctcaggaaaggaggt 335

                                                                       
Query: 181 tttccttcttatccctctgtacttaaggacattggatatgaggaaggtggcattgctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttccttcttatccctctgtacttaaggacattggatatgaggaaggtggcattgctttc 275

                                                                       
Query: 241 gtcatcttgcttggctgatgatgcagcacaagaacttaactcaggttgcgcttgatgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| 
Sbjct: 274 gtcatcttgcttggctgatgatgcagcacaagaacttaactcagggtgtgcttgatgcag 215

                                                                       
Query: 301 gtttcagttatagatgtgggttggtttaaatatgcttggcccagggagtggcactattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gtttcagttatagatgtgggttggtttaaatatgcttggcccagggagtggcactattag 155

                         
Query: 361 gaggtatggccttg 374
           ||||||||||||||
Sbjct: 154 gaggtatggccttg 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)