Query= MSMg01no082_b15.b1 MSMg01no082_b15.b1 CHROMAT_FILE:
MSMg01no082_b15.b1 PHD_FILE: MSMg01no082_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:30 2005
(624 letters)
>mm_chr1_168312499_168313524
Length = 1026
Score = 1094 bits (566), Expect = 0.0
Identities = 615/638 (96%), Gaps = 14/638 (2%)
Strand = Plus / Minus
Query: 1 tgactcctgcaaggtgccctctgacct------acacacacacacacgcacacatgctgt 54
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 855 tgactcctgcaaggtgccctctgacctacacacacacacacacacacgcacacatgctgt 796
Query: 55 ggcgtgtgcacccacatacatacatgcaaaacaaaagaaataagtagtgtaaaagaaaag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggcgtgtgcacccacatacatacatgcaaaacaaaagaaataagtagtgtaaaagaaaag 736
Query: 115 aaaaagaaagcaggtccacctgtgactgtcacatagaaagaaggacattttacttgtaac 174
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 735 aaaaagaaaacaggtccacctgtgattgtcacatagaaagaaggacattttacttgtaac 676
Query: 175 aaaaaccattcttttgttactagcaaatattcatttcattatgaggaaatagtgttcaat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaaaaccattcttttgttactagcaaatattcatttcattatgaggaaatagtgttcaat 616
Query: 235 gaagaaataatgcttagtttccttattggagatttacacttattttacaatcttatcagg 294
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagaaataatgcttagtttccagattggagatttacacttattttacaatcttatcagg 556
Query: 295 agggacatttttaaagcacttacttcctcccaacagtctaccaaacgggcactgagcg-c 353
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct: 555 agggacatttttaaagcacttacttcctcccaacactctaccaaacgggcgctgagcggc 496
Query: 354 tctactgggtgctgttctactcagcacacatcccaagcccaggcttctactgcctgactt 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctactgggtgctgttctgctcagcacacatcccaagcccaggcttctactgcctgactt 436
Query: 414 gtcagcatccactgctcagctgtgtctcctaatgccgccctctcctggtacccactgcct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cccagcatccactgctcagctgtgtctcctaatgccgccctctcctggtacccactgcct 376
Query: 474 ctc-tcacagccttcactgtctgaatcctgactcccaccctggtcatcagaatgtgacaa 532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctcatcacagccttcactgtctgaatcctgactcccaccctggtcatcagaatgtgacaa 316
Query: 533 gctgtgtggggagtaagagtactaagcacaaggaagagtgtgtgtgtgtgtgtgtgtgtg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctgtgtggggagtaagagtactaagcacaaggaagagtgtgtgtgtgtgtgtgtgtgtg 256
Query: 593 tgtgtgtgt------acaatcatcacctacacaacatt 624
||||||||| |||||||||||||||||||||||
Sbjct: 255 tgtgtgtgtgtgtgtacaatcatcacctacacaacatt 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space: 623824
Effective search space used: 623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_b15.g1 MSMg01no082_b15.g1 CHROMAT_FILE:
MSMg01no082_b15.g1 PHD_FILE: MSMg01no082_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:30 2005
(544 letters)
>mm_chr1_168159795_168160741
Length = 947
Score = 915 bits (473), Expect = 0.0
Identities = 521/543 (95%), Gaps = 13/543 (2%)
Strand = Plus / Plus
Query: 1 acactggagccttgaaaagagtattcttattaaaatactcatctgtaatcaaactgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 acactggagccttgaaaagagtattcttattaaaatactcatctgcaatcaaactgaaaa 251
Query: 61 ca---------cttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 111
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagaagtaattcttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 311
Query: 112 gaagaaactacaacgaattacttgttggtaagacactacaaactagagatcatagccttc 171
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 312 gaagaaactacaacgaattacttgttggtaagacactgcaaactagagatcacagccttc 371
Query: 172 acactaaggcaaaactaagt-aaaaaaatcagaagacaagtcaaaac--agcacttacga 228
| |||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||| |
Sbjct: 372 atactaaggcaaaactaagtaaaaaaaaccagaagacaattcaaaacatagcacttacaa 431
Query: 229 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 491
Query: 289 gataacctattctaaataagaaattctaggctagtcaaggttgagactcccatcttttaa 348
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 gataacctattctaaataagaaattctaggctagtcaaggttgagacttccatcttttaa 551
Query: 349 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 611
Query: 409 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 671
Query: 469 tttacagatgatcccaatttatcaacaagggctttttgttttggtttttttctttgtttt 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 672 cttacagatgatcccaatttatcaacaagggctttttgttttggtttttttcttt-tttt 730
Query: 529 ttt 531
|||
Sbjct: 731 ttt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 947
Length adjustment: 10
Effective length of query: 534
Effective length of database: 937
Effective search space: 500358
Effective search space used: 500358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
