Query= MSMg01no082_b20.b1 MSMg01no082_b20.b1 CHROMAT_FILE:
MSMg01no082_b20.b1 PHD_FILE: MSMg01no082_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:31 2005
(611 letters)
>mm_chr1_23599865_23600876
Length = 1012
Score = 1139 bits (589), Expect = 0.0
Identities = 604/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaaccaatctcctcttcattgatctaaccattggaagtctcctcagctaaaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaccaatctcctcttcattgatctaaccattggaagtctcctcagctaaaaa 263
Query: 64 gtgcatagtaccctgtgagataagttgccttactatcccatgttatagatgtgaaagcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgcatagtaccctgtgagataagttgccttactatcccatgttatagatgtgaaagcaa 323
Query: 124 aacagtgtatgtttggtccatggcttagcaagggacagcatcagctgaaaacacaggcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacagtgtatgtttggtccatggcttagcaagggacagcatcagctgaaaacacaggcag 383
Query: 184 gcagaggcagctctttagagtgtagtaaatgctgtcaagaaggtgatgtagactcccagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcagaggcagctctttagagtgtagtaaatgctgtcaagaaggtgatgtagactcccagg 443
Query: 244 ccatgaggaacatactctgaacaggcacgagagccatttgttcccttggcttccactttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 ccatgaggaacatactctgaacaggcacgagagccatttgttcccttggcttccattttc 503
Query: 304 agttgttggttctttttggcctccccagtagtgttctacctattctccgacacactcagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agttgttggttctttttggcctccccagtagtgttctacctattctccgacacactcagc 563
Query: 364 agtcggaacaaggttgtgtggggtccaggaaaagtctttattaatatgtcattaatgcat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtcggaacaaggttgtgtggggtccaggaaaagtctttattaatatgtcattaatgcat 623
Query: 424 cttcattttcctccttcgttaactaacgttggacaggtttcctctttgccaacccacatg 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cttcattttcctccttcgttaactaacattggacaggtttcctctttgccaacccacatg 683
Query: 484 ctttagttttgcttgctttcagttatggcagat-ttcacttaacttctctgtacaaaact 542
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 ctttagttttgcttgctttcagttatggcagatgttcacttaacttctctgtacaaaact 743
Query: 543 agggatgctgaatgttacatcttcacattcaaattacccatgggttgccagagcgtgtga 602
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 744 agcgatgctgaatgttacatcttcacattcaaattagccatgggttgccagagcgtgtga 803
Query: 603 cttccctgg 611
|||||||||
Sbjct: 804 cttccctgg 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_b20.g1 MSMg01no082_b20.g1 CHROMAT_FILE:
MSMg01no082_b20.g1 PHD_FILE: MSMg01no082_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:31 2005
(618 letters)
>mm_chr1_23696120_23697137
Length = 1018
Score = 1166 bits (603), Expect = 0.0
Identities = 612/615 (99%)
Strand = Plus / Minus
Query: 4 cctgccttttgtatttaaatcacacaaaggtcatatgctaaatacttttaccaaacctgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cctgccttttgtatttaaatcacacaaaggtcatatgctaaatacttttaccaaacctgt 759
Query: 64 acacttgcccgaactcacctacaaggacatactccacacagcctgtcaaacagagagaaa 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 758 acacttgcccgaactcacctacaaggacatactccacacagcctatcaaacagagagaaa 699
Query: 124 cccgactcgccactgtgagcatctagtggctttcagtaatagaggcaacttcattttgta 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 698 cccgactcgccactgtgagcatctactggctttcagtaatagaggcaacttcattttgta 639
Query: 184 ggctactgaagacaaacacgctttgaaaagctctcagtggacacatcgcaatgattgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 638 ggctactgaagacaaacacgctttgaaaagctctcagtggacacatcacaatgattgaaa 579
Query: 244 cacattcctccatcactcgctctctagcaccccacaaaacaaatgatgcagagaaaccca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cacattcctccatcactcgctctctagcaccccacaaaacaaatgatgcagagaaaccca 519
Query: 304 gacgttttgacaagcctccctttgacaatgggagccaacagcactcccaaatcccctctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gacgttttgacaagcctccctttgacaatgggagccaacagcactcccaaatcccctctg 459
Query: 364 tttttccacagcatactaatctcagaatttatcagtttgaatagattccccgaagagtaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttttccacagcatactaatctcagaatttatcagtttgaatagattccccgaagagtaa 399
Query: 424 ctcttgacttaagcattcggcgctcaattcttcaggggaaatttccatagcctgcattaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcttgacttaagcattcggcgctcaattcttcaggggaaatttccatagcctgcattaa 339
Query: 484 taatcataagaatccagaaacagtgttactcggagcacgcacaaggccgtcttgttctct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 taatcataagaatccagaaacagtgttactcggagcacgcacaaggccgtcttgttctct 279
Query: 544 cacacagagacaagttgttaatgaactgataaagtagggcttggaaaaacatcaaaattt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cacacagagacaagttgttaatgaactgataaagtagggcttggaaaaacatcaaaattt 219
Query: 604 acagcatattccttg 618
|||||||||||||||
Sbjct: 218 acagcatattccttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
