BAC Information

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BAC

Clone NameMSMg01-082F14
Chromosome1 (Build37)
Map Location 69,374,009 - 69,374,418
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082F14.T7 (MSMg01no082_f14.b1)MSMg01-082F14.TJ (MSMg01no082_f14.g1)
ACCAG302739AG302740
length686687
length of high quality
(start - end)
512 (65 - 576)525 (71 - 595)
definitionCHROMAT_FILE: MSMg01no082_f14.b1 PHD_FILE: MSMg01no082_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005CHROMAT_FILE: MSMg01no082_f14.g1 PHD_FILE: MSMg01no082_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCNGTGTCTCCTGTAAGCAGATGTGTAATGAGGTAAGACCTATGATA
GGCTAACTCTGAAATCCCACACGCTTATCTGATAAACAGAGATGTTAACA
CTTACTTTGGTGAGTAGCTGAGATTAAATATGACACTGAAGTGTCTGGCA
CAGGAGAAAAGTAAGTAAAGAAAATGAAGCAAGGTAGAGTTGGTGAGATG
CCTCAGTGGGTAAAGGGGATTGCTGTCAAGTCTAATGACCTGGGTTGTAC
TTTTGGGGCCCAGATATTGTAAGAAGAGAGTAGACTTCCGCATTGTTTTT
TCTCTGATGTCCACAGGTTGACATGTGTACAAGCTCCTGGTTCTAATAAA
TGAATAAACTGTAATGGAAAAAAAAGGTACAAGGTATGTTCCCATCGAAT
CTCCATCATAGTAAACGTTTGGAAACTTGATGTGTACATGACACAAAGGG
CCTGGAACAATGAAGGAACCCTGGAAAACCATATGCAACAAAAGGCAACT
CAGACTTTTGAGGACAGTTTTTGTCAGTATGGACTGGGGTTTCATGAGGC
ATATTCAGGAAGATAATGTTACTTGAGGTGCTTCTTGTGAGAGAAGAAAG
AGGATTTATACTGGTGCACAAAGGAAGCCGCTTTAT
AATGTAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAAATGCCCCAACAGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGAAACTCACACAATATGTATTCACTGATATTTGGAT
ATTAGCCCCAAACCTAGGATACCCAAGATATAAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_f14.b1 MSMg01no082_f14.b1 CHROMAT_FILE:
MSMg01no082_f14.b1 PHD_FILE: MSMg01no082_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:47 2005
         (512 letters)



>mm_chr1_69373508_69374418
          Length = 911

 Score =  679 bits (351), Expect = 0.0
 Identities = 397/413 (96%), Gaps = 3/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 100 gtagctgagattaaatatgacactgaagtgtctggcacaggagaaaagtaagtaaagaaa 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gtagctgagattaaatatgacactgaagtgtctggcacaggagaaaagtaagtaaagaaa 852

                                                                       
Query: 160 atgaagcaaggtagagttggtgagatgcctcagtgggtaaaggggattgctgtcaagtct 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 atgaagcaaggtagagttggtgagatgcctcagtgggtaaaggggattgctgtcaagtct 792

                                                                       
Query: 220 aatgacctgggttgtacttttggggcccagatattgtaagaagagagtagacttccgcat 279
           |||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||| 
Sbjct: 791 aatgacctggattgtacttttggggcccagatattggaagaacagagtagacttctgcaa 732

                                                                       
Query: 280 tgttttttctctgatgtccacaggttgacatgtgtacaagctcctggttctaataaatga 339
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 t--tttttctctgatgtccacaggttgacatgtgtacaagctcctggttctaataaatga 674

                                                                       
Query: 340 ataaactgtaatggaaaaaaaaggtacaaggtatgttcccatcgaatctccatcatagta 399
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 673 ataaactgtaatggaaaaaaaag-tacaaggtatattcccatcgaatctccatcatagta 615

                                                                       
Query: 400 aacgtttggaaacttgatgtgtacatgacacaaagggcctggaacaatgaaggaaccctg 459
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 614 aacttttggaaacttgatgtgtacatgacacaaagggcctggaacaatgaaggaatcctg 555

                                                                
Query: 460 gaaaaccatatgcaacaaaaggcaactcagacttttgaggacagtttttgtca 512
           |||||||| ||||||||||||||||| | ||| ||||||||||||||| ||||
Sbjct: 554 gaaaaccacatgcaacaaaaggcaacccggacctttgaggacagttttcgtca 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space:   452302
Effective search space used:   452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)