BAC Information

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BAC

Clone NameMSMg01-082G22
Chromosome1 (Build37)
Map Location 152,245,932 - 152,385,437
singlet/doubletdoublet
Overlap geneTpr
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331
Downstream geneEG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G22.T7 (MSMg01no082_g22.b1)MSMg01-082G22.TJ (MSMg01no082_g22.g1)
ACCAG302802AG302803
length717714
length of high quality
(start - end)		673 (40 - 712)530 (65 - 594)
definitionCHROMAT_FILE: MSMg01no082_g22.b1 PHD_FILE: MSMg01no082_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:53 2005CHROMAT_FILE: MSMg01no082_g22.g1 PHD_FILE: MSMg01no082_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,384,769 - 152,385,437)(152,245,932 - 152,246,461)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCCTGTGTCACCATAGCCAAGAAGCAAGTAATTTTAATCTCCAACTACAG
ATCAATGCTGGACAGCTAGTCTTTTTTTAAAAAAGCCAACTATTGCCCAC
ATGAGATTCAGTAAGCCAATGAGTCTATGGCTGGAAACTGGGGCTACACT
CACACATGGTAAGGACCTGGTGGCCGTGAGCAGGCCTTCGTACCTATCCT
GCTTCGGTAAGACTGAGACAGCTACTGAAGCCAAGGATCTTGAAGGTTTG
GGAAGTTAAGGAGAGTCTCCCCAGCAGTGTTTTAGGCAGGACCCTAGCAG
CCCAGAAATGTGTCTCTGGTCTTTACAAGACATTCCTTCCCAGCCAACTC
CTTCAAAACCCTTCACAGAGTCAAGGGATCAAATAACAACCCTTAACTGG
TTAATCAAATACAGCTGGATTTTCACAAAAAATGTTCACCCAAGCACAAC
TTTAATTTCATTTTAGCATAAATTTAGGCACTAGTTATATAGTGTTCTGG
CCACTGAGTATTTAATTAAAAGTCTGAGGTTATCAAATTCTATTATATTC
CCAAGTTCAATGCCTGCTTCCAGAATATATCACATGACAGATTTAAAAAT
AAACTATCAACCATCTGTAACTGCGTGACTATTTACAGTAATGAGATAGC
ATGCTCTTCAGTAATTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAACAGTAACCCAGCATTCATGGTATTTTGATATAC
TTGGGAGCTGGGTCACTCTACATTGCTGCCTGTTTCTTTAGAGCCGTGAT
AAGAATAACAGATTAAATGTGATAGAAAGGGTTGCTACTATGTTGTTTTA
ATAGAAGAGTGATACCCAGTCTTTAACCATATAGGACTGTACTTTTAAAA
TTACATTTGATTTAAGACTCAGATTTGTTTTTCAAAACTATGTAAGAAAA
ACATGCTTTCAGATTCCTTATAGGAGCATAATATACCCAAAATATTTCAG
TAAATTAATTTGTAAGGAATATACAGTGTTTTGAGCCCTTTAAAAATTTT
AATTTGTTCTTGCTTGGGTTTTGTTTTGTTTGCCTCGGCATTAAAAGAAA
ACTGTTTTCAGAAAACTTAAAATACGTATTTATATATGGAAAAATAACAG
CATGTTCTTGGGTGAAGTGGGTTTGCAAATTAATATAGACTTTAATGCAA
GGTCCTGATACACATTCTAGATTTGATGAAACAGCAACAGAGTGAAGTTT
AACCCAGAAGAACTGTGGACACACGAATAGATACAATTTAACAATTGGGG
GAGAACTAGGTGTTTAACTGCCCTGGTGGTCAGCTTTCTGTTAGACACTG
GGATAAAACATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g22.b1 MSMg01no082_g22.b1 CHROMAT_FILE:
MSMg01no082_g22.b1 PHD_FILE: MSMg01no082_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:53 2005
         (673 letters)



>mm_chr1_152384565_152385637
          Length = 1073

 Score = 1270 bits (657), Expect = 0.0
 Identities = 666/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccctgtgtcaccatagccaagaagcaagtaattttaatctccaactacagatc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctccctgtgtcatcatagccaagaagcaagtaattttaatctccaactacagatc 814

                                                                       
Query: 65  aatgctggacagctagtctttttttaaaaaagccaactattgcccacatgagattcagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatgctggacagctagtctttttttaaaaaagccaactattgcccacatgagattcagta 754

                                                                       
Query: 125 agccaatgagtctatggctggaaactggggctacactcacacatggtaaggacctggtgg 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agccagtgagtctatggctggaaactggggctacactcacacatggtaaggacctggtgg 694

                                                                       
Query: 185 ccgtgagcaggccttcgtacctatcctgcttcggtaagactgagacagctactgaagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ccgtgagcaggccttcgtacctatcctgcttcggtaagactgagacagctactgaagcca 634

                                                                       
Query: 245 aggatcttgaaggtttgggaagttaaggagagtctccccagcagtgttttaggcaggacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aggatcttgaaggtttgggaagttaaggagagtctccccagcagtgttttaggcaggacc 574

                                                                       
Query: 305 ctagcagcccagaaatgtgtctctggtctttacaagacattccttcccagccaactcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctagcagcccagaaatgtgtctctggtctttacaagacattccttcccagccaactcctt 514

                                                                       
Query: 365 caaaacccttcacagagtcaagggatcaaataacaacccttaactggttaatcaaataca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caaaacccttcacagagtcaagggatcaaataacaacccttaactggttaatcaaataca 454

                                                                       
Query: 425 gctggattttcacaaaaaatgttcacccaagcacaactttaatttcattttagcataaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gctggattttcacaaaaaatgttcacccaagcacaactttaatttcattttagcataaat 394

                                                                       
Query: 485 ttaggcactagttatatagtgttctggccactgagtatttaattaaaagtctgaggttat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttaggcactagttatatagtgttctggccactgagtatttaattaaaagtctgaggttat 334

                                                                       
Query: 545 caaattctattatattcccaagttcaatgcctgcttccagaatatatcacatgacagatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaattctattatattcccaagttcaatgcctgcttccagaatatatcacatgacagatt 274

                                                                       
Query: 605 taaaaataaactatcaaccatctgtaactgcgtgactatttacagtaatgagatagcatg 664
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 273 taaaaataaactatcaaccatctgtaactgcgtgactatttaaagtaatgagatagcatg 214

                    
Query: 665 ctcttcagt 673
           |||||||||
Sbjct: 213 ctcttcagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_g22.g1 MSMg01no082_g22.g1 CHROMAT_FILE:
MSMg01no082_g22.g1 PHD_FILE: MSMg01no082_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:53 2005
         (530 letters)



>mm_chr1_152245732_152246661
          Length = 930

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagtaacccagcattcatggtattttgatatacttgggagctgggtcactctacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacagtaacccagcattcatggtattttgatatacttgggagctgggtcactctacatt 260

                                                                       
Query: 61  gctgcctgtttctttagagccgtgataagaataacagattaaatgtgatagaaagggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcctgtttctttagagccgtgataagaataacagattaaatgtgatagaaagggttg 320

                                                                       
Query: 121 ctactatgttgttttaatagaagagtgatacccagtctttaaccatataggactgtactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactatgttgttttaatagaagagtgatacccagtctttaaccatataggactgtactt 380

                                                                       
Query: 181 ttaaaattacatttgatttaagactcagatttgtttttcaaaactatgtaagaaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaattacatttgatttaagactcagatttgtttttcaaaactatgtaagaaaaacat 440

                                                                       
Query: 241 gctttcagattccttataggagcataatatacccaaaatatttcagtaaattaatttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttcagattccttataggagcataatatacccaaaatatttcagtaaattaatttgta 500

                                                                       
Query: 301 aggaatatacagtgttttgagccctttaaaaattttaatttgttcttgcttgggttttgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aggaatatacagtgttttgagccctttaaaaattttaatttgttcttgtttgggttttgt 560

                                                                       
Query: 361 tttgtttgcctcggcattaaaagaaaactgttttcagaaaacttaaaatacgtatttata 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtttgcctcggtattaaaagaaaactgttttcagaaaacttaaaatacgtatttata 620

                                                                       
Query: 421 tatggaaaaataacagcatgttcttgggtgaagtgggtttgcaaattaatatagacttta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tatggaaaaataacagcatgttcttgggtgaagtgggtttgcaaattaatataggcttta 680

                                                             
Query: 481 atgcaaggtcctgatacacattctagatttgatgaaacagcaacagagtg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcaaggtcctgatacacattctagatttgatgaaacagcaacagagtg 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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