Query= MSMg01no082_j03.b1 MSMg01no082_j03.b1 CHROMAT_FILE:
MSMg01no082_j03.b1 PHD_FILE: MSMg01no082_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:04 2005
(407 letters)
>mm_chr1_162059267_162060073
Length = 807
Score = 752 bits (389), Expect = 0.0
Identities = 401/405 (99%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 4 gaattcagagatgatcc-acagagtgtgtgagcacaaagactggccatgctctgtctcag 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagagatga-ccaacagagtgtgtgagcacaaagactggccatgctctgtctcag 262
Query: 63 tacgtctcagaacatctgaaggcctgagctgagcagaccaagcagatgcagttggagatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacgtctcagaacatctgaaggcctgagctgagcagaccaagcagatgcagttggagatc 322
Query: 123 ttatgtttctaaaggttcacgggaagtatccgtgcatttggcaaatgttgatgccaatgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttatgtttctaaaggttcacgggaagtatccgtgcatttggcaaatgttgatgccaatgc 382
Query: 183 aaaccatttgtctgaaagagagctcctggctgcatgaaaactacttctatcaccactgta 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 aaaccatttgtctgaaagagagctcctggctgcatgcaaactacttctatcaccactgta 442
Query: 243 atctgagataaacattcaaatttatagttggtccaaagtcttcagttgccattaaaaagt 302
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 atctgagataaacattcaaatttatagttggtccaaagtcttcagttgtcattaaaaagt 502
Query: 303 aaaaattacaacattttactctactccaagacagatgtatatggaatttcatcccaaata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaaattacaacattttactctactccaagacagatgtatatggaatttcatcccaaata 562
Query: 363 aatatgactattcctattaaatagtcttatagctccatgtgaagt 407
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatatgactattcctattaaatagtcttatagctccatgtgaagt 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_j03.g1 MSMg01no082_j03.g1 CHROMAT_FILE:
MSMg01no082_j03.g1 PHD_FILE: MSMg01no082_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:04 2005
(257 letters)
>mm_chr1_162248401_162249057
Length = 657
Score = 485 bits (251), Expect = e-142
Identities = 254/255 (99%)
Strand = Plus / Minus
Query: 1 attccttatttgaaatttatatatttattaagcattaatcatcaaaaccaggaggaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 attccttatttgaaatttatatatttattaagcattaatcatcaaaaccaggaggaattt 396
Query: 61 gttttgtttttaatttcttctgatttctgcctttattagtagttaatttatagggatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gttttgtttttaatttcttctgatttctgcctttattagtagttaatttatagggatatt 336
Query: 121 atttttatcaaaatcaagccgagccacacctccagccttgctttccttcctccctaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 335 atttttatcaaaatcaagccgagccacacctccagccttgctttccttcttccctaccag 276
Query: 181 tgtagcctgccagtgacagtgcgctgacaaagggaacactagttcttggaaataggattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtagcctgccagtgacagtgcgctgacaaagggaacactagttcttggaaataggattc 216
Query: 241 tggagttttgctttc 255
|||||||||||||||
Sbjct: 215 tggagttttgctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
