Query= MSMg01no083_a13.b1 MSMg01no083_a13.b1 CHROMAT_FILE:
MSMg01no083_a13.b1 PHD_FILE: MSMg01no083_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:39 2005
(591 letters)
>mm_chr1_164368361_164369352
Length = 992
Score = 1075 bits (556), Expect = 0.0
Identities = 580/588 (98%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcttatgac-acttcactggctattataaatgtactattttgaagatttggat 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcttaagaagacttcactggctattataaatgtactattttgaagatttggat 264
Query: 64 ctgaaatattctagaacatttttgtgctggctggttaacccttcttgagagaaggtgagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgaaatattctagaacatttttgtgctggctggttaacccttcttgagagaaggtgagt 324
Query: 124 aagacaaatccttctgcgaaccctgtttctctgctaggtttctgggctgaggctgggccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagacaaatccttctgcgaaccctgtttctctgctaggtttctgggctgaggctgggccc 384
Query: 184 tctcctttggcccctggggggtcagaggtgcctgcaacacaagcacactggggcctggtc 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 tctcctttggcccctggggggtcagaggtacctgcaacacaagcacactggggcctggtc 444
Query: 244 ttgagcgctgagatttggagttccgttctgcctgaacctgtccacacgtgtggcagggaa 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 ttgagcgctgagatttggagttccgttctgcctgaacctgtccacacttgtggcagggaa 504
Query: 304 cctaggataatacctcactgccagccatcaaaccctggctgaaggatgccacttggcttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctaggataatacctcactgccagccatcaaaccctggctgaaggatgccacttggcttg 564
Query: 364 cttggcctggccttctggctcgagtcagagaacttcagtcctgaaacttgccacaattac 423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttggcctggccttctgcctcgagtcagagaacttcagtcctgaaacttgccacaattac 624
Query: 424 aatggggaaccacgccctccaggcccctctgcacaggtctaacaaggaaaaacaaagcct 483
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 gatggggaaccacgccctccaggcccctctgcacaggtctaacaaggaaagacaaagcct 684
Query: 484 agcagaacaaccctcccctaagcacatctatcacagtccatctctgcaattcaagctact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcagaacaaccctcccctaagcacatctatcacagtccatctctgcaattcaagctact 744
Query: 544 gaaaagacaaacactacctcacgtctggtctacattagagctaatgtg 591
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaaagacaaacactacctcacgtctggtctacattagagctaatgtg 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_a13.g1 MSMg01no083_a13.g1 CHROMAT_FILE:
MSMg01no083_a13.g1 PHD_FILE: MSMg01no083_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:39 2005
(530 letters)
>mm_chr1_164496518_164497447
Length = 930
Score = 793 bits (410), Expect = 0.0
Identities = 426/432 (98%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 101 ttttccatttagctcatctcatgcttccttccaaaaattctcattcccattcccgagccg 160
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 930 ttttccatttagctcatctcatgctttcttccaaaagttctcattcccattcccgagccg 871
Query: 161 tatttgaggtccgtgtgtaaatcaggttgtctcatgccctgcccaggattcctatttctc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tatttgaggtccgtgtgtaaatcaggttgtctcatgccctgcccaggattcctatttctc 811
Query: 221 aaatctgctaagacgattgctgctcgatttatttcctttccagctttcaatcatttgttg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aaatctgctaagacgattgctgctcgatttatttcctttccagctttcaatcatttgttg 751
Query: 281 ctattgtttcctatgagg--aaaaaaaaaaggaatgtaaattataagaacgtgaataaat 338
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 750 ctattgtttcctatgaggaaaaaaaaaaaaggaatgtaaattataagaatgtgaataaat 691
Query: 339 aacaaataataaaatgctgagttccatctgtcagtgaatagcagtaggagacagctcagc 398
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aagaaataataaaatgctgagttccatctgtcagtgaatagcagtaggagacagctcagc 631
Query: 399 aaaaaatatgctgtctattctttctttatagggaaacactcctaagcaaacaagaatgtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaaaatatgctgtctattctttctttatagggaaacactcctaagcaaacaagaatgtg 571
Query: 459 gtctttcaaatatagaaatacagactccctggcaaacaaactaatagtatttgcttgcag 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtctttcaaatatagaaatacagactccctggcaaacaaactaatagtatttgcttgcag 511
Query: 519 aacaattcatat 530
||||||||||||
Sbjct: 510 aacaattcatat 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
