BAC Information

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BAC

Clone NameMSMg01-083D01
Chromosome1 (Build37)
Map Location 97,287,876 - 97,288,333
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D01.T7 (MSMg01no083_d01.b1)MSMg01-083D01.TJ (MSMg01no083_d01.g1)
ACCAG303381AG303382
length701713
length of high quality
(start - end)
453 (46 - 498)461 (75 - 535)
definitionCHROMAT_FILE: MSMg01no083_d01.b1 PHD_FILE: MSMg01no083_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:51 2005CHROMAT_FILE: MSMg01no083_d01.g1 PHD_FILE: MSMg01no083_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTTT
CTGGAGTTCATCTTCTTGAGCTCTTTATACATAATGGATATTAGTCCCCT
ATCAGATTTAGGATTGGTAAAGATCCTTTCCCAGTCGGTCGGTGGCCTTT
TTGTCTTATTGAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCGATTTTCTTTCTTAAAGCACAAGCCCTTGGTGTTCTGT
TCAGAAAATTTCCCCCTGTACCCATATTTTAGAGGTTTTCCCCCACTTCC
TCCTGTATACATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGACCCA
CTTAGACATTTTCGTGTGTATTTTTCCCATTTATTTCAGTCAAAGAAATT
GTTTATCTTGTGGTCTTTTATCTCTTAAATTCTGTTTTTCTATGTAGCCT
ATACATTTTTCAAACTAAGATCTTGCATTTGATCTAATCCAAAATTGTTT
TTTATCAGAATTGCACAACATCTTTAAAATGATTACCTTTATTCCTTCTG
GATTTCATATATGCCTTTTGTTATTCTTTATTCCTTCTTCTCCTTTACTG
TTTCCCGGGCCCTGCTGATCTTTCCTGCCAGCTTTCTTTCTGGTTTTTTT
A
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCTTACTCAAGCACTCAGGACAAA
ACTGCAAGCAGATTCTTTAATTGTGTATAACATGAATGGTCTCTCGACTT
CTTGTTCCACACTCATACCTCATGAGCCATATTTCCAATGTCTACATTTC
TGAGTTCTGTCTTCCAAGTTATCTCCAGAAAATCTCATTGAATTCTGCTT
AGACCAATTTTGGTGTTCTACATCTCGTAGCTCTAAGTTCTTCAGTTATT
CTGGTTCCAAAGTCCTACAAATGAGGGTGTTAGGTTTCTCACAGCAACAC
CAACATTCATTGATAGTAATTTTCTGTGTTAGCTACTTTTCTCATTGTAG
TCATTAGACACCTAATAAAATCAACTGAAGAAAAGGAGTTACTTTGGTTC
ATGTTTAGAGAGTAGAGTTATCATGGTAGAGACGTATGGTAACTGGGATC
ATGGTAGGCACCAATCAGAGAGCAGGGTTGGGGTGGGGAGGGTAGACTCA
CCTTTTTCCTTTTTCCCCCTTTTCCTTTATTTCTTGTCTTTTTGTTTTCT
TCTTAAATTTTATTTTGTTCTACCTCATCTTTTTTTTTATATCATATTCT
TGTTACCTTATCTCCACCTGCTTTTTCTTTTTCTCTTACAGCTATCTATC
CTTTCACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d01.g1 MSMg01no083_d01.g1 CHROMAT_FILE:
MSMg01no083_d01.g1 PHD_FILE: MSMg01no083_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:51 2005
         (461 letters)



>mm_chr1_97287677_97288537
          Length = 861

 Score =  777 bits (402), Expect = 0.0
 Identities = 444/458 (96%), Gaps = 1/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccttactcaagcactcaggacaaaactgcaagcagattctttaattgtgtataacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agccttactcaagcactcaggacaaaactgcaagcagattctttaattgtgtataacatg 259

                                                                       
Query: 61  aatggtctctcgacttcttgttccacactcatacctcatgagccatatttccaatgtcta 120
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 260 aatggcctctcgacttcttgttccacactcatacctcatgagccagatttccaatatcta 319

                                                                       
Query: 121 catttctgagttct-gtcttccaagttatctccagaaaatctcattgaattctgcttaga 179
           |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 catttctgagttctagtcctccaagttatccccagaaaatctcattgaattctgcttaga 379

                                                                       
Query: 180 ccaattttggtgttctacatctcgtagctctaagttcttcagttattctggttccaaagt 239
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccacttttggtgttctccatctcgtagctctaagttcttcagttattctggttccaaagt 439

                                                                       
Query: 240 cctacaaatgagggtgttaggtttctcacagcaacaccaacattcattgatagtaatttt 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctacaaacgagggtgttaggtttctcacagcaacaccaacattcattgatagtaatttt 499

                                                                       
Query: 300 ctgtgttagctacttttctcattgtagtcattagacacctaataaaatcaactgaagaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgtgttagctacttttctcattgtagtcattagacacctaataaaatcaactgaagaaa 559

                                                                       
Query: 360 aggagttactttggttcatgtttagagagtagagttatcatggtagagacgtatggtaac 419
           |||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct: 560 aggagtaactttggttcatgtttagagagtagagttatcatggtaaagaagtatggcaac 619

                                                 
Query: 420 tgggatcatggtaggcaccaatcagagagcagggttgg 457
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 620 tgggatcatggtaggcaccaatcagaaagcagggttgg 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)