BAC Information

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BAC

Clone NameMSMg01-083E19
Chromosome1 (Build37)
Map Location 90,101,835 - 90,102,075
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3
Upstream geneChrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E19.T7 (MSMg01no083_e19.b1)MSMg01-083E19.TJ (MSMg01no083_e19.g1)
ACCAG303462AG303463
length690824
length of high quality
(start - end)
242 (66 - 307)---
definitionCHROMAT_FILE: MSMg01no083_e19.b1 PHD_FILE: MSMg01no083_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:59 2005CHROMAT_FILE: MSMg01no083_e19.g1 PHD_FILE: MSMg01no083_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGATCACATACGTAGTGGAGCGCGGAATTCGGTAA
TGCGAAAAAGAAGGTACAGCCCCTCGGCTTCTGCTTCCACGGGTGCTCCT
CCGATCCCCAAAAAGTTCTCAAGGGGGTCTCCCCCGAAGAAGTCGAAGGA
GAAAGGGTCGTGGCCCCCGAAGAACTCCCTGAAGACCTCCGCGGGGTCTC
GGAAGGAGAAGACGTACTGGAAGGCATCGTGGAACGGGCTGTCCGCCGCG
CCGCCTCCGCCCACCTCGCCCACTTCGCCGCAGCGGTCGTACACCTCGCG
CTTGCTGACTACCGTTAAGACCTCGTAGGCCTGCGCCACCTGCTTGATTC
GCCTCTCGGCCTCCTCCTTGTGCTCGGGGTTCTTGTCCGGGTGCCACTTG
AGCGCAAGCTTGCGGTACGCCTTGCGGATGGCCTCGGCTGAGGTCTGCCG
CGGCACGCCCAGCACCTCGTAGTAGTCCACCATGGCGGCTGGCCGGCCCG
CGGCCTCGGCGCTGGAGCGGCGGTGGCAGCTGCTGAACGCCCGCCTACCG
GCCGGCGCCACACTCCCTTGTGACGCAAACGTCTCTCATTGGTGGAGGCG
GTCGGTGCCTCAGCCTATCAGAATGGAGGGCCCCAGGGATCTGTTTTTTT
TCTAGAGATGCTCAGTGACGCTTAATAGACGGGACCGAGT
NTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGACAGCAGCAGGACATTGAANNCAATTAAAAT
GNCAAAANCTGCCTTTAGTGGGCCCACCCACTGNGAATTACAGCATGATT
AAGATTCGCCTAGATGAGGGGACTGGGAATTATTTCTTTCAATTCTTNNN
NAAAAGNNGGTTTTTAAANAAAAAAAAATTCCCNCAACCCCAAAAAATTT
CCCAAAATACTCTTAATTCCGAAAATANNCCCCCCNNAANNNAAAACACA
TTTATATATTTTTTTTTATTTCTTNNCCCCCCCCCTTTTTAAAAAAAATT
AATTTATTAATAAATAATTTATTTTTTTTTTGGGGGGTGGNNNNCCCNNN
NNNNNNNCCTTTTTTTTTTTCCCCCCCNNCCCNNCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCNNNNNNNNNCCCCCTATTATAATTTTTTAATTA
AAAAAAATAGGGGTAGCGTTACTATATAGCGCCGCCGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNCNNNCNNNNNNNNNNNNNCNN
NNNNCNCCCNCCCCCCCNNNCCCCCCCCCCCCNNCCCCCCNCCCCCCNNN
NCNCCCCCCNNCCAACCNNCCCCNCCCCCCNNNNCCCCCCCCCNCCCCNN
NCCCCCCCCCCCCCCCNCNNNNCNCCNNCNNNCNCCCCCCNCCCNCCCNN
CCNCCCCCCCCNCCCNNNCCCCCCCCCCCCCNNCCCCCCNCCCCCCCCNC
NCCCCCCTTTTTTCTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e19.b1 MSMg01no083_e19.b1 CHROMAT_FILE:
MSMg01no083_e19.b1 PHD_FILE: MSMg01no083_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:59 2005
         (242 letters)



>mm_chr1_90101635_90102277
          Length = 643

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcccctcggcttctgcttccacgggtgctcctccgatcccc-aaaaagttctcaagg 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acagcccctcggcttctgcttccacgggtgctcctccgatccccaaaaaagttctcaagg 260

                                                                       
Query: 60  gggtctcccccgaagaagtcgaaggagaaagggtcgtggcccccgaagaactccctgaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtctcccccgaagaagtcgaaggagaaagggtcgtggcccccgaagaactccctgaag 320

                                                                       
Query: 120 acctccgcggggtctcggaaggagaagacgtactggaaggcatcgtggaacgggctgtcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 acctccgcggggtctcggaaggagaagacgtactggaaggcatcgtggaacgggctgccc 380

                                                                       
Query: 180 gccgcgccgcctccgcccacctcgcccacttcgccgcagcggtcgtacacctcgcgcttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgcgccgcctccgcccacctcgcccacttcgccgcagcggtcgtacacctcgcgcttg 440

            
Query: 240 c 240
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)