BAC Information

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BAC

Clone NameMSMg01-083J17
Chromosome1 (Build37)
Map Location 116,876,012 - 116,876,350
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083J17.T7 (MSMg01no083_j17.b1)MSMg01-083J17.TJ (MSMg01no083_j17.g1)
ACCAG303679AG303680
length722732
length of high quality
(start - end)
339 (64 - 402)301 (63 - 363)
definitionCHROMAT_FILE: MSMg01no083_j17.b1 PHD_FILE: MSMg01no083_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005CHROMAT_FILE: MSMg01no083_j17.g1 PHD_FILE: MSMg01no083_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTCAA
GGGGACAAAAAAGTCATCACAAGCACATATTTGCATTACATAAAACTCAT
CTTGTCTCTTTGAAAGGTTGTCCATTACCATATATAACCATAATCCTGAA
GAACACTCTCTTAACCTTCTTATGTAAAAGTGTTAATGCCAAGTTACACA
AGACATACACTCGAGCAAGATACCTGACATTGTTTCTCCTTTCCCTATGC
ATGTGGACCTACACATATGCACATATAGGGACATATACATACACATTTTC
AAGAACTTATGCTTGTCCAAGTAATTTTTCTTTAAAAATAATCTTAGGTA
TTATAATTCCCCAAAGTTATGCAAACAGTAAGTTCATGAAAATGTTAATG
AACGACCAAGGATAAAATTACCACCAAACTAAGGAAGGTAATCAATGAAA
TTAAGTAACAACACAGTTTTACCTTAATATATTGATTCTGTTTGAAGACA
CATGTCAGACCAGATTTTTGTAGAGTGTATAATATTCAGAAGAAGATCAA
TGTTAAGTTTTTTATGAAAAATTACTGGAGGAAGGCAGAAAAGTAATCTA
TGTTAACTTTATTTAAAAGAACTGTAAACATATGTTAGAAGTGTTTAGAT
ATACAGTAATGAGGTAATTTAATATGTGTTGAGAGATATTGAGTCTATAA
AAAGCCAATAAATACCTCCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGATCTTTCCAAAACTTTAATCATGAATGGGTGTTGG
ATCTTGTCAAATGCTTTTTCTGCAGCTAACGAGATGATGGTGTATTTTTT
GTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATAT
TAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATG
ATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTAAGGAT
TTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTG
TTGGATCTTTCTGAGGTTTAGGTATCAGAGTAATATTGTCTTCATAAAAC
GCCCCCTTTTTTTTTATCTTCTACCTCTATCTTGTGATATATCTCGCGTA
AAACTGTATTTACATTCTCTTTGAATGCCTGAGTCATTACTTGATCAATC
ACGTCAATTCTTGTTATTCTTATTATCTGTATTATATAAATTTACTTCTT
CTATTCTATTACATTATTTGCTTATACTTTATTCAAATTTTTTTATCCCT
CTCTCTACATTTCCTTTTTCTTTATTTTTTTTTCTACCTTTGTCCTTTTT
TCCCTTAATATTTTCCGTTTATCTTTCTTTTCCTCCCTTCTTCTCGCTTT
CCTTAATTTTCTGGATATCAATCCACAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_j17.b1 MSMg01no083_j17.b1 CHROMAT_FILE:
MSMg01no083_j17.b1 PHD_FILE: MSMg01no083_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:23 2005
         (339 letters)



>mm_chr1_116875812_116876550
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcacaagcacatatttgcattacataaaactcatcttgtctctttgaaaggttgtcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcatcacatgcacatatttgcattacataaaactcatcttgtctctttgaaaggttgtcc 480

                                                                       
Query: 61  attaccatatataaccataatcctgaagaacactctcttaaccttcttatgtaaaagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attaccatatataaccataatcctgaagaacactctcttaaccttcttatgtaaaagtgt 420

                                                                       
Query: 121 taatgccaagttacacaagacatacactcgagcaagatacctgacattgtttctcctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taatgccaagttacacaagacatacactcgagcaagatacctgacattgtttctcctttc 360

                                                                       
Query: 181 cctatgcatgtggacctacacatatgcacatatagggacatatacatacacattttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctatgcatgtggacctacacatatgcacatatagggacatatacatacacattttcaag 300

                                                                       
Query: 241 aacttatgcttgtccaagtaatttttctttaaaaataatcttaggtattataattcccca 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 299 aacttatgcttgtccaagtaatttttctttaaaaataatcttagatattataattcccca 240

                                                  
Query: 301 aagttatgcaaacagtaagttcatgaaaatgttaatgaa 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aagttatgcaaacagtaagttcatgaaaatgttaatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)