Query= MSMg01no083_n11.b1 MSMg01no083_n11.b1 CHROMAT_FILE:
MSMg01no083_n11.b1 PHD_FILE: MSMg01no083_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:41 2005
(515 letters)
>mm_chr1_71654584_71655498
Length = 915
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttttcctca-cagtctctttgggaaataatttaaatcacagaagttataaa 63
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttttttcctcaacagtctctttgggaaataatttaaatcacagaagttataaa 263
Query: 64 aactacagcagcactcaccatgcacttttcttttttcttttggtttttgaagacagggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactacagcagcactcaccatgcacttttcttttttcttttggtttttgaagacagggtt 323
Query: 124 tctctgtgtgttataacagccctgtctgtcctggaactcgctttgtagaccaggctggcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctgtgtgttataacagccctgtctgtcctggaactcgctttgtagaccaggctggcc 383
Query: 184 tggaactcacagagatcccaccccatgcacccttaactatgtgctatttggaaatagtgg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tggaactcacagagatcccaccccatgcacccttaactatgtgttatttggaaatagtgg 443
Query: 244 tcacacacgcccctattcacagctaagctatagattgttctgataacaggtctcccaatc 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 444 tcacacacgcccctattcacagctaagctacagattgttctgataacaggtctcccagtc 503
Query: 304 attgttactgaaaatatatctatctgtgcttaaagccaaaatctagggcttgactcacgc 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attgtcactgaaaatatatctatctgtgcttaaagccaaaatctagggcttgactcacgc 563
Query: 364 cacacaaagcactccaccactacactacatccactgcacccctttaaaaaacttttattt 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacacagagcactccaccactacactacatccactgcacccctttaaaaaacttttattt 623
Query: 424 actttgagatgagcctcactgaattgcacaggctaactttgaactcacagtagcccagga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actttgagatgagcctcactgaattgcacaggctaactttgaactcacagtagcccagga 683
Query: 484 tggccttcttgctccagcctcccaagtacctg 515
||||||||||||||||||||||||||||||||
Sbjct: 684 tggccttcttgctccagcctcccaagtacctg 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_n11.g1 MSMg01no083_n11.g1 CHROMAT_FILE:
MSMg01no083_n11.g1 PHD_FILE: MSMg01no083_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:41 2005
(530 letters)
>mm_chr1_71818969_71819898
Length = 930
Score = 681 bits (352), Expect = 0.0
Identities = 358/360 (99%)
Strand = Plus / Minus
Query: 1 tcctctggtccacagccaaaaactcttaagagcctttcactggccctgccatcttaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcctctggtccacagccaaaaactcttaagagcctttcactggccctgccatcttaagag 301
Query: 61 ctggaatttgtaggggcagagacctcctgacccctcaactccccaggtctgtttggtcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctggaatttgtaggggcagagacctcctgacccctcaactccccaggtctgtttggtcac 241
Query: 121 caggtggctggattgtatccctggttttgcttatgtcatttgtcttagttagggttttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caggtggctggattgtatccctggttttgcttatgtcatttgtcttagttagggttttac 181
Query: 181 tgctgtgaacagacaccatgaccaatgcaagtcttatagaagacagtatttcactggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgctgtgaacagacaccatgaccaatgcaagtcttatagaagacagtatttcactggggc 121
Query: 241 tggcttacaggttcagaggttcagtctagtatcatcaaggcagcatccagacaggcgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tggcttacaggttcagaggttcagtctagtatcatcaaggcagcatccagacaggcgtgg 61
Query: 301 tgcaggagaagctgagagttttatatctccatctggaggccgctagcagttgactgactt 360
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 60 tgcaggagaagctgagatttttatatctccatctggaggctgctagcagttgactgactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
