CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGAGAATATCCTATAAATGCTACTTGTACATACATGTATATACAAAT
ATTCCCCCTAGTTCCTCACTCAGGCTGTACTGTGATAATATCATTTTAAT
ATCTAACTTCTAAATTAGTGGGCATTTACTCTTTAATTTTGATATAACTT
TTTAAAAAGCCCAAAGCCTTGATAATAATTTTGAAAGAAAGAAGGAAATG
TGCCTAGAGACTAGATGGGTCAGTTCAAACTCTCTTAAAAAGTGTGTATC
GTGTTGTGAGAAATTATGTCTAGAAAGATTTATGTGAAAAAACAATGTTT
TATAAGTGACATTTCACATTATTAAAAGCTGCATAATCTCAGACATATCA
AATTATAATAGAAGTACACTGTATTTTTCTTACTGTTCTAGTATAAGGTG
CCCTGGAAACACCATATAATGAAACTTGTGATTTATTTTTGTGCACTTCA
AGGGAAATACAGCAAATTCACTCTTCAGCTCCTTGGTGATGCTTTTGTCA
CTTTTAGCTTTGCTGCATAAGCAGATAATTGATTTTGTCTGTGATTTCAC
AATGAATTCTAACTCCTTCAATTTTGCAATTGTCTTTATAGGAAAGTGTC
ATCCACTTTAAAGGAGCCAAATTAATGTGCAATTGCTAGATATGCATGAG
AATTTTAGATGTACCTTGTGAATAGATTGAT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGAAATACAGAAAGGCTGAG
AAACACCTGAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAA
AAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
GCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCAGTTCCTCTGAAAATTGGACATAGTATTACCGGAGGAACCCGC
AATATCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACAGCCAGAAGC
TGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAAAATATATG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATCAC
GAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACCCAATTACAAAAGAACTCAAATGAAATGTACTCACTGATAAGTGGA
TATTAACCCAGAAACCTAATATAGCGAGATATAAGGTACAATATGTAAAA
CATATGAAACTGANGAAGAACGAAGACCAAAG

Query= MSMg01no084_b14.b1 MSMg01no084_b14.b1 CHROMAT_FILE:
MSMg01no084_b14.b1 PHD_FILE: MSMg01no084_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:02 2005
         (601 letters)



>mm_chr1_142995238_142996237
          Length = 1000

 Score = 1062 bits (549), Expect = 0.0
 Identities = 586/601 (97%), Gaps = 7/601 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagagaat---atcctataaatgctacttgtacatacatgtatatacaaatat 60
           |||||||||||||||   ||  ||||||||||||||||||||| ||||||||||||||||
Sbjct: 800 ggaattccagagaatataat--tataaatgctacttgtacatatatgtatatacaaatat 743

                                                                       
Query: 61  tccccctagttcctcactcaggctgtactgtgataatatcattttaatatctaacttcta 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 742 tccccctagttcctctctcaggctgtactgtgataatatcattttaatatctaacttcaa 683

                                                                       
Query: 121 aattagtgggcatttactctttaattttgatataactttttaaaaagcccaaagccttga 180
           ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 682 aattagtgggtgtttactctttaattttgatacaactttttaaaaagcccaaagccttga 623

                                                                       
Query: 181 taataattttgaaagaaagaaggaaatgtgcctagagactagatgggtcagttcaaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taataattttgaaagaaagaaggaaatgtgcctagagactagatgggtcagttcaaactc 563

                                                                       
Query: 241 tcttaaaaagtgtgtatcgtgttgtgagaaattatgtctagaaagatttatgtgaaaaaa 300
           |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcttaaaaa--gtgtatcatgttgtgagaaattatgtctagaaagatttatgtgaaaaaa 505

                                                                       
Query: 301 caatgttttataagtgacatttcacattattaaaagctgcataatctcagacatatcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatgttttataagtgacatttcacattattaaaagctgcataatctcagacatatcaaa 445

                                                                       
Query: 361 ttataatagaagtacactgtatttttcttactgttctagtataaggtgccctggaaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttataatagaagtacactgtatttttcttactgttctagtataaggtgccctggaaacac 385

                                                                       
Query: 421 catataatgaaacttgtgatttatttttgtgcacttcaagggaaatacagcaaattcact 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catataaagaaacttgtgatttatttttgtgcacttcaagggaaatacagcaaattcact 325

                                                                       
Query: 481 cttcagctccttggtgatgcttttgtcacttttagctttgctgcataagcagataattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcagctccttggtgatgcttttgtcacttttagctttgctgcataagcagataattga 265

                                                                       
Query: 541 ttttgtctgtgatttcacaatgaattctaactccttcaattttgcaattgtctttatagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttgtctgtgatttcacaatgaattctaactccttcaattttgcaattgtctttatagg 205

            
Query: 601 a 601
           |
Sbjct: 204 a 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space:   585090
Effective search space used:   585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)