TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCACTTTGCACTGTATAACATCAGTCAATAGCAGAATTATTCCATT
AGTTTAAAACTAACTGTATTGGGTTAGATATATGATAGAGAATAGACAGA
TGATAAGTAATAGATAATAGATAGATATATGATATGCATATATGATAGTA
GATAAAAGATGACAAAGATAGACATATAAATACATGAATTGTAGATTGTA
AATATATTGAGTGATACATAGATTATATAATAAGAGGATAACAGTAATAA
ATGATAATTGACTGATTGACTATAATTATAGACAATATATCAATGAAGTG
ACAAATCTATTCCCTTACATTAAGAGGTCATCTTCTAATTATGGTCTCCT
TTATGCCTTCATGTTGTTCTGCACACACAAACACACACACACCAATTCTA
TTTGTGCATATGAAACAAAACATGGCTGTTTTATGCTCTGAATCTGGCTT
CTTTCATTTAGCATAATTTCCCATTCCATGTATTTTGCTGCAAATATTAT
AACTTTATTCTGCTTACATATATCCAATTGCCATATAAAATTCTATTGCA
CGTATAAAATTCCATATTTTCTTTTTATGCCCATCCATGGATGGATTTAT
AGGCTCGTTCCATTTCTTTGCAATTATGGCTAGTATAGCGATGATAAAAA
G

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGATCTTGGATTCGGCTAGCGAGAATTTT
ATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTTGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGAGCCGGGTAGCGTACTTTCTACTTCTATCTTGTGAAAAAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CATTATACTCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATA
ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTT
CGTCCAGGTTTTCCAGCTTTGTCGAGTATAGCCTTTCGCATTATGTTC

Query= MSMg01no084_d11.b1 MSMg01no084_d11.b1 CHROMAT_FILE:
MSMg01no084_d11.b1 PHD_FILE: MSMg01no084_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (591 letters)



>mm_chr1_125791043_125792031
          Length = 989

 Score = 1100 bits (569), Expect = 0.0
 Identities = 582/587 (99%), Gaps = 2/587 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcactttgcactgtataacatcagtcaatagcagaattattccattagttta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaattcattcactttgaactgtataacatcagtcaatagcagaattattccattagttta 780

                                                                       
Query: 65  aaactaactgtattgggttagatatatgatagagaatagacagatgataagtaatagata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aaactaactgtattgggttagatatatgatagagaatagacagatgataagtaatagata 720

                                                                       
Query: 125 atagatagatatatgatatgcatatatgatagtagataaaagatgacaaagatagacata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atagatagatatatgatatgcatatatgatagtagataaaagatgacaaagatagacata 660

                                                                       
Query: 185 taaatacatgaattgtagattgtaaatatattgagtgatacatagattatataataagag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 659 taaatacatgaattgtagattgtaaatatattgagtgatacatagattatataat--gag 602

                                                                       
Query: 245 gataacagtaataaatgataattgactgattgactataattatagacaatatatcaatga 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 601 gataacagtaataaatgataattgactgattgacaataattatagacaatatatcaatga 542

                                                                       
Query: 305 agtgacaaatctattcccttacattaagaggtcatcttctaattatggtctcctttatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agtgacaaatctattcccttacattaagaggtcatcttctaattatggtctcctttatgc 482

                                                                       
Query: 365 cttcatgttgttctgcacacacaaacacacacacaccaattctatttgtgcatatgaaac 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttcatgttgtcctgcacacacaaacacacacacaccaattctatttgtgcatatgaaac 422

                                                                       
Query: 425 aaaacatggctgttttatgctctgaatctggcttctttcatttagcataatttcccattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaacatggctgttttatgctctgaatctggcttctttcatttagcataatttcccattc 362

                                                                       
Query: 485 catgtattttgctgcaaatattataactttattctgcttacatatatccaattgccatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgtattttgctgcaaatattataactttattctgcttacatatatccaattgccatat 302

                                                          
Query: 545 aaaattctattgcacgtataaaattccatattttctttttatgccca 591
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaattctattgcacgtataaaattccatattttctttttatgccca 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 989
Length adjustment: 10
Effective length of query: 581
Effective length of database: 979
Effective search space:   568799
Effective search space used:   568799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)