BAC Information

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BAC

Clone NameMSMg01-084F02
Chromosome1 (Build37)
Map Location 163,749,183 - 163,749,755
singlet/doubletsinglet
Overlap geneAI848100
Upstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl
Downstream geneEG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F02.T7 (MSMg01no084_f02.b1)MSMg01-084F02.TJ (MSMg01no084_f02.g1)
ACCAG304207AG304208
length745672
length of high quality
(start - end)
585 (102 - 686)556 (55 - 610)
definitionCHROMAT_FILE: MSMg01no084_f02.b1 PHD_FILE: MSMg01no084_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:19 2005CHROMAT_FILE: MSMg01no084_f02.g1 PHD_FILE: MSMg01no084_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTNTTTTCTTCTTTTTTTTTTTTCTCTCTTTTCTTTCC
GCCTTTCTTATCTATAATTGCGGCGCTAAACGACTCACTATTCCGAGAGG
TCCGCGGAATTCTTTAAAGAACACTTATGAGGCCTGCAAACCTTAAATAT
TATCCAACCCTTTAAAGAAAAAAATGTGCAGATACTTGGATGATAGTCAT
TATTTACTGAGCTGCTCATGCATGCCAGGCACAGTTCAAGCACTGTTTAT
ATAATCCTCTTACAACCTAGCAGTGGTAATATCTCTTTTTAAAAAATGAA
GACACAGACAGAGTCTGTACTTAGATGTCCCAGCAGATAGTAGGCACTGC
TGTGTATCTTCCTAGGATTCCCCCCCCCTTTGCCTATAAAGTCTGATTTT
CTTTTTTACCTCTCAAGTTACATAATATTTATTTTGACTAGCAGTAATTG
TCTGTAGTAGAATTTCAGATTAGTGCAAAGTAGCATTGGATTTAATCCTA
ACTTCAGTATTTACTATTTTGTAATTTAGGTAGTAAGCCAAATCTCTAAA
GTTTGATTTTTTTTTTTCATGTAGGAGCCAAGGTCAAACAAACCTCTCAG
GCTTAACATATATGAAAGTAACCAGTATAACATCTGACACATAGAGGTAT
TCAGATATTAACTGTCTCTACTTAACTCTATATGCACAAGTTGCTATAAC
TTGAGTTGAGTAGCATTTACAAAGGGGATGTCAGAGATACTATCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAAGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCGTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTATGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATACGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f02.b1 MSMg01no084_f02.b1 CHROMAT_FILE:
MSMg01no084_f02.b1 PHD_FILE: MSMg01no084_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:19 2005
         (585 letters)



>mm_chr1_163748771_163749761
          Length = 991

 Score = 1007 bits (521), Expect = 0.0
 Identities = 558/573 (97%), Gaps = 9/573 (1%)
 Strand = Plus / Minus

                                                                       
Query: 22  acttatgaggcctgc-aaaccttaaatattatccaaccctttaaag-aaaaaaatgtgca 79
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 985 acttatgaggcctgcaaaaccttaaatattatccaaccctttaaagaaaaaaaatgtgca 926

                                                                       
Query: 80  gatacttggatgatagtcattatttactgagctgctcatgcatgccaggcacagttcaag 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gatacttggatgatagtcattatttactgagctgctcatgcatgccaggcacagttcaag 866

                                                                       
Query: 140 cactgtttatataatcctcttacaacctagcagtggtaat-atctctttttaaaaaatga 198
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 865 cactgtttatataatcctcttacaacctagcagtggtaataatctctttttaaaaaatga 806

                                                                       
Query: 199 agacacagacagagtctgtacttagatgtcccagcagatagtaggcactgctgtgtatct 258
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agactcagacagagtctgtacttagatgtcccagcagatagtaggcactgctgtgtatct 746

                                                                       
Query: 259 tcctaggatt---ccccccccctttgcctataaagtctgattttcttttttacctctcaa 315
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcctaggattcccccccccccctttgcctataaagtctgattttcttttttacctctcaa 686

                                                                       
Query: 316 gttacataatatttattttgactagcagtaattgtctgtagtagaatttcagattagtgc 375
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttacataatatttattttgactagcagtaattgtctgtagtagaatttcagattagtgc 626

                                                                       
Query: 376 aaagtagcattggatttaatcctaacttcagtatttactattttgtaatttaggtagtaa 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagtagcattggatttaatcctaacttcagtatttactattttgtaatttaggtagtaa 566

                                                                       
Query: 436 gccaaatctctaaagtttga---tttttttttttcatgtaggagccaaggtcaaacaaac 492
           ||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||
Sbjct: 565 gccaaatctctaaagtttgattttttttttttttcatgtaggagccaagggcaaacaaac 506

                                                                       
Query: 493 ctctcaggcttaacatatatgaaagtaaccagtataacatctgacacatagaggtattca 552
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 ctctcagggttaacatatatgaaagtaaccagtataacatctgacacatagaggtattta 446

                                            
Query: 553 gatattaactgtctctacttaactctatatgca 585
           ||||||| |||||||||||||||||||||||||
Sbjct: 445 gatattagctgtctctacttaactctatatgca 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 991
Length adjustment: 10
Effective length of query: 575
Effective length of database: 981
Effective search space:   564075
Effective search space used:   564075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)