Query= MSMg01no084_g24.b1 MSMg01no084_g24.b1 CHROMAT_FILE:
MSMg01no084_g24.b1 PHD_FILE: MSMg01no084_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:28 2005
(533 letters)
>mm_chr1_93171128_93172060
Length = 933
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%), Gaps = 1/530 (0%)
Strand = Plus / Plus
Query: 5 gaattctccagttcctccactgtgcccctaagccctgagccatctagcaggggagggctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagttcctccactgtgcccctaagccctgagccatctagcaggggagggctg 264
Query: 65 ttggttaagcataactggaagttttacacaggtgctggggaaacagcagtcagatctcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggttaagcataactggaagttttacacaggtgctggggaaacagcagtcagatctcat 324
Query: 125 cagctttcccacagaaatagcattcgtagggaatctggaagctatcctgtaaagaggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctttcccacagaaatagcattcgtagggaatctggaagctatcctgtaaagaggtaa 384
Query: 185 ctcacacaaggcaggggatggttaagaggggacacagtgactatagtgccctgaagaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcacacaaggcaggggatggttaagaggggacacagtgactatagtgccctgaagaaag 444
Query: 245 agccagccatcctgaaagatgccctgccctttttctctgagggcacctctgccccggagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccagccatcctgaaagatgccctgccctttttctctgagggcacctctgccccggagc 504
Query: 305 aggtggtgatggtggcagtgttggcaggacaaggctctgcactgtgcagctttgctgaag 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 aggtggtgatggtggcagtgttggcaggacaaggctctgcactgtacagctttgctgaag 564
Query: 365 gaacctgggtactctggtcctagtgttaacctcttcattctgtgtttgccgtatcctaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaacctgggtactctggtcctagtgttaacctcttcattctgtgtttgccgtatcctaac 624
Query: 425 ttcatgtttgcttttgtttcctttttttttttttt-atttaaagatttttttgttttgtt 483
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 ttcatgtttgcttttgttttctttttttttttttttatttaaagatttttttgttttgtt 684
Query: 484 ttgtgcttttaatagatgagggttactaccagggtggaaaatttcagttt 533
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtgtttttaatagatgagggttactaccagggtggaaaatttcagttt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_g24.g1 MSMg01no084_g24.g1 CHROMAT_FILE:
MSMg01no084_g24.g1 PHD_FILE: MSMg01no084_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:28 2005
(586 letters)
>mm_chr1_93251106_93252089
Length = 984
Score = 934 bits (483), Expect = 0.0
Identities = 517/535 (96%), Gaps = 13/535 (2%)
Strand = Plus / Minus
Query: 1 catacaggttcagctagaaccactcaggagcacttggtgacagcttccaggtcccacagt 60
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 533 catacaggttcagctagaacctctcaggagcacttggtgacagcttccagatcccacagt 474
Query: 61 gcccaccccaatgcag--------ca---ggggtggttttccttcatcttcctcctttca 109
|||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 473 gcccaccccaatgcagctatccatcattctggatggttttccttcatcttcctcctttca 414
Query: 110 actcctatgtctcctctaaggcctagctcctccagggagtccttcctgactgccagcctg 169
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 actcc--tgtctcctctaaggcctagctcctccagggagtccttcctgactgccagcctg 356
Query: 170 tgcccgatgcccctagcaccctcccagtggtggcctttccaccgtgtagaaagggtctgc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcccgatgcccctagcaccctcccagtggtggcctttccaccgtgtagaaagggtctgc 296
Query: 230 ttttttgtttgttttttgcttttggagacaggtagccttggccacctgaaactcactctg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttttttgtttgttttttgcttttggagacaggtagccttggccacctgaaactcactctg 236
Query: 290 tagaccaggctagcctcaaattcagagattcatctgcctctaactcccaagtgctggcat 349
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 235 tagaccaggctagcctcaaattcagagattcatctacctctaactcccaagtgctggcat 176
Query: 350 taaaggtgcgtgccaccacgtgcccagcagtgatgggcttcttaaaggtagagacacttc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 taaaggtgcgtgccaccacgtgcccagcagtgatgggcttcttaaaggtagagacacttc 116
Query: 410 taggctcctccccctgggcctcagatcatggcacccttgagagatggatgatgatgctct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 taggctcctccccctgggcctcagatcatggcacccttgagagatggatgatgatgctct 56
Query: 470 gtcagaggaccagccttcagaagggagccatgcaagatggggcatgttggcgctc 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtcagaggaccagccttcagaagggagccatgcaagatggggcatgttggcgctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 984
Length adjustment: 10
Effective length of query: 576
Effective length of database: 974
Effective search space: 561024
Effective search space used: 561024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
