BAC Information

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BAC

Clone NameMSMg01-084H08
Chromosome1 (Build37)
Map Location 177,491,236 - 177,645,609
singlet/doubletdoublet
Overlap geneFh1, Kmo, Opn3, Chml, Wdr64
Upstream geneFmn2, Grem2, Rgs7
Downstream geneExo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084H08.T7 (MSMg01no084_h08.b1)MSMg01-084H08.TJ (MSMg01no084_h08.g1)
ACCAG304305AG304306
length687798
length of high quality
(start - end)
366 (48 - 413)223 (131 - 353)
definitionCHROMAT_FILE: MSMg01no084_h08.b1 PHD_FILE: MSMg01no084_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:29 2005CHROMAT_FILE: MSMg01no084_h08.g1 PHD_FILE: MSMg01no084_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,645,257 - 177,645,609)(177,491,236 - 177,491,458)
sequence
TACCTATTTCGAGAGGATCCGCGGAATTCTACTCAGTTCCCATAATTGTA
AACTGTGTGCTGTGTTTACAGTAACATCAAATAGTTTATACGCAGCCAAT
CACTGTGATTTGTCATCTCTGTAGAATCATTATGGAGATAGTGATTATAT
GTCTGAGAAGAGATGTATGAAGGATTGTGGGAGCAATGTCCTCCTTGAAA
GAAGAATCACACACTTCAGGACATGGAAACCAATTCAAGTCCTGGCTCTA
CTGTTCAATAGTCATAGGATAGCTCAGGCCAGTGTCTAGAGTTCTCTGTG
CTTGAGTTTCCCTCATCTGGAAAATTACTATCATGAATAACCCCCTTAAA
TAAGGATGAGGATACATAGACTGCAGAGTAATTAGGAAGAGTATAATGTA
CTTGGACTGCACCAAGGGCCAGATAGGAACTCAGTTGATGTCAACATGTG
AGGAGCAGTGCCCTAGATTTCCAGGAATACTAAAGGAAACAGACTTAGGT
GTCCTCTCTGCCAGCTAAATCCTCCCACTCAGTACCTTTCCTGTTGAGCA
CACTGGACAGTCATGCACTTTATCATATACACCCTTTAGTGACTTAGCCC
CAGGGATGTACTAGCTACCTCTACTCCTGCCAAATTGATTGATTTTTGAC
AAGATATGACAGCTGAATCATGGACAGGTGAAAAGAC
TTTTTTTTTGTTTTTTTGTTTTGGGTTTTTTTTTTTTTTNNNNNNTTTAT
ATCAAATCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAACCAAGGTAAAC
GTCACAAACAATCCTCTTTGCCTCTTCATCCCAAGAGTTATGATCACAGG
TATGTGCTACAGTCCCCAGTTATGGGCAATTCCTATGGCATTTGCTGAAT
AGGATCATGACAGAGAAGTCAGCTTTCCTTTCATTTAAAACTCTTAAGTT
TTATTGTTATCATTAATGTTGTAGGAGGGAGAGAGAGTTTGTGTGAGTTA
CGGCGCACACATGCTATGGAGGTCACATTATTACTCTCATGAGTTGATTC
TTTCTTTCCACCATGTGTTCCACAAACAATTCACGTCCTGAGGCCTTCTC
TGCAGATTAATTTATGCATTTCACCACTCTCACCATTAGATACTTTCCTG
TCAGACTTGTCTATTCGTAATTTCTCACTCCAAAGTTTCATTACTCATCT
AAATTTTGTTCTTCATTATATCTGTAAACCTGCTCTTTATCTTCTATATT
TTTCCTCTCTATTTAATCCAGCTTTATATCCTTTTTATTTCCTTAACGTA
TTTCTCAGCTATCCTATTATACTCTTTTTCTTTTGATTACCCCCCCCCCT
TCTTCCTACTATATACCCCTTACATCCTACCAATATTAACTTCTACCCCT
TTCTCCACCCCAACCATTTAAACACCAACTATTACCTAATTATATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_h08.b1 MSMg01no084_h08.b1 CHROMAT_FILE:
MSMg01no084_h08.b1 PHD_FILE: MSMg01no084_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:29 2005
         (366 letters)



>mm_chr1_177645257_177646022
          Length = 766

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   taaactgtgtgctgtgtttacagtaacatcaaatagtttatacgcagccaatcactgtga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taaactgtgtgctgtgtttacagtaacatcaaatagtttatacgcagccaatcactgtga 294

                                                                       
Query: 62  tttgtcatctctgtagaatcattatggagatagtgattatatgtctgagaagagatgtat 121
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttgtcatttctgtagaatcattatggagatagtgattatatgtctgagaagagatgtat 234

                                                                       
Query: 122 gaaggattgtgggagcaatgtcctccttgaaagaagaatcacacacttcaggacatggaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gaaggattgtgggagcaatgtcctccttgaaagaagaatcacacacttcaggacatggaa 174

                                                                       
Query: 182 accaattcaagtcctggctctactgttcaatagtcataggatagctcaggccagtgtcta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 accaattcaagtcctggctctactgttcaatagtcataggatagctcaggccagtgtcta 114

                                                                       
Query: 242 gagttctctgtgcttgagtttccctcatctggaaaattactatcatgaataaccccctta 301
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 113 gagttctctgtgcttgagtttccctcatctggaaaattactatcaggaatgaccccctta 54

                                                                
Query: 302 aataaggatgaggatacatagactgcagagtaattaggaagagtataatgtac 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  aataaggatgaggatacatagactgcagagtaattaggaagagtataatgtac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no084_h08.g1 MSMg01no084_h08.g1 CHROMAT_FILE:
MSMg01no084_h08.g1 PHD_FILE: MSMg01no084_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:29 2005
         (223 letters)



>mm_chr1_177491036_177491658
          Length = 623

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtaaccaaggtaaacgtcacaaacaatcctctttgcctcttcatcccaagagtta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtaaccaaggtaaacgtcacaaccaatcctctttgcctcttcatcccaagagtta 260

                                                                       
Query: 61  tgatcacaggtatgtgctacagtccccagttatgggcaattcctatggcatttgctgaat 120
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 261 tgatcacaggtatgtgctacagtccccagttacgggcaagtcctatggcatttgctgaat 320

                                                                       
Query: 121 aggatcatgacagagaagtcagctttcctttcatttaaaactcttaagttttattgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatcatgacagagaagtcagctttcctttcatttaaaactcttaagttttattgttat 380

                                                      
Query: 181 cattaatgttgtaggagggagagagagtttgtgtgagttacgg 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaatgttgtaggagggagagagagtttgtgtgagttacgg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)