BAC Information

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BAC

Clone NameMSMg01-084L07
Chromosome1 (Build37)
Map Location 21,035,313 - 21,196,005
singlet/doubletdoublet
Overlap geneTram2, LOC100040291
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1
Downstream geneTmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L07.T7 (MSMg01no084_l07.b1)MSMg01-084L07.TJ (MSMg01no084_l07.g1)
ACCAG304487AG304488
length713730
length of high quality
(start - end)
144 (72 - 215)234 (72 - 305)
definitionCHROMAT_FILE: MSMg01no084_l07.b1 PHD_FILE: MSMg01no084_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:48 2005CHROMAT_FILE: MSMg01no084_l07.g1 PHD_FILE: MSMg01no084_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,035,313 - 21,035,454)(21,195,772 - 21,196,005)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCATTGTAATGTCCACATTTTTAGAGATAGAGGTTTGCCAAAGGGCTGGT
GACCCACAGGTCTACAGAAGAGGGTGTTTATTTCTGTTGTGTTTAAATAT
GAGGGGTTTCACAAACCTAAGCACACAGCTCCTCTATGGAGGTTTAAGAG
CTGGTGAGAGAACTAGCAATGGGCGCATGGAGTTGGAAGACACAGGAGTC
AGACTGGTAGCTCTGGCTTCTTAAGCCCTCTTCTGAATCATTTTTATGTC
CCACTGTGCATCCGGCACCAATTGATGAAGTGGCAGAACACCTGCGTGGG
CTGGAAGCCTTCTAGTCTGGAGTTTTGAAAGATCCACCCAGGACTGTCTT
CATGGTGGTACTTTATACCCACCAGTTTATGAGTGATTAATCTCTCATTC
ACACACACACTTACACACTTTTTCACACCCTTCTCACACTCCCCTTATAT
CAAAGCCTTGTACGTTAATGAGAGACATCTATTTCTCTCACATCTCTGTC
TTTTATTCTCAGACTTTCTTTATCTCCTTCACGTCACAGTGTCTTCTTCT
CCCGTTTTCTTTTCGGTTTAGAAACCCTTGGTACAAAGTCATCTCTTTTT
CTTCTCTTAACACTTCCTCTTTCTTTCTCTTTTCCAAATGCTATTCTTTA
ACCTTTTTCTTTT
TGAAGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATCTGGGTCCCATTAACCTGAAGGTTA
TTAGATCCCATATAAATAGGCACCCACCACAGAGTCTAGGACTTGACTCG
GGATACAACTCAAGGCAGGGATGTAAGTCATGTTTTAAGTTTAAGTCACT
GTGCTCAAGAGATGTGGAAAATAAAAGTGCCTCCAAGCTGTAAGCCCCAT
TTGTCCTAGGACAAATAACTTCCCAGCATGCTGTGGGACGTTCATGTACG
ATAAAAAACCCAATGTTTTCACTTTCTGTAAGTGTTCTCATGTCTCCAAC
TGCATAGTATACGCTTGATCACTAATACGTATGAATAATGCCTGCATGTA
TGCTTGCCCCTCATCACACGAATATGGGAAGGTCATATATAGCCCTGTGG
GATTTGCCTTTATCTTGTTAATTCTTGCCCAACACCCTGTAAACTTTGAT
TACGGCTCTTGTTAACATTTCATGTACCTGTTTCGCTTTTAACCATGCTT
GCTTTCAATTTGGTTCAACATATTGTTTCATTTGTTCTTTATTCTCACCC
AGTATGATTTACCACTACCTCCCTGTAAATTACCCGGTATGAATACTTTG
TTTCTATCATCACGATTCTCAATATGTCTTCCCCGCACGCCTTTCCAATC
TCCTTGACCCTTCCCCTCTTTTATTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l07.b1 MSMg01no084_l07.b1 CHROMAT_FILE:
MSMg01no084_l07.b1 PHD_FILE: MSMg01no084_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:48 2005
         (144 letters)



>mm_chr1_21035113_21035656
          Length = 544

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagatagaggtttgccaaagggctggtgacccacaggtctacagaagagggtgtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagatagaggtttgccaaagggctggtgacccacaggtctacagaagagggtgtttat 260

                                                                       
Query: 61  ttctgttgtgtttaaatatgaggggtttcacaaacctaagcacacagctcctctatggag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgttgtgtttaaataggaggggtttcacaaacctaagcacacagctcctctatggag 320

                                 
Query: 121 gtttaagagctggtgagagaac 142
           ||||||||||||||||||||||
Sbjct: 321 gtttaagagctggtgagagaac 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no084_l07.g1 MSMg01no084_l07.g1 CHROMAT_FILE:
MSMg01no084_l07.g1 PHD_FILE: MSMg01no084_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:48 2005
         (234 letters)



>mm_chr1_21195572_21196205
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctgggtcccattaacctgaaggttattagatcccatataaataggcacccaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 434 tcatctgggtcccattaacctgaaggttattagatcccatataaataggtacccaccaca 375

                                                                       
Query: 61  gagtctaggacttgactcgggatacaactcaaggcagggatgtaagtcatgttttaagtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagtcaaggacttgactcgggatacaactcaaggcagggatgtaagtcatgttttaagtt 315

                                                                       
Query: 121 taagtcactgtgctcaagagatgtggaaaataaaagtgcctccaagctgtaagccccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taagtcactgtgctcaagagatgtggaaaataaaagtgcctccaagctgtaagccccatt 255

                                                                 
Query: 181 tgtcctaggacaaataacttcccagcatgctgtgggacgttcatgtacgataaa 234
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 254 tgtcctaggacaaataacttcccagcatgctgggggatgttcatgtacgataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)