BAC Information

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BAC

Clone NameMSMg01-084O11
Chromosome1 (Build37)
Map Location 20,914,418 - 20,914,804
singlet/doubletsinglet
Overlap genePaqr8
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream geneEfhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O11.T7 (MSMg01no084_o11.b1)MSMg01-084O11.TJ (MSMg01no084_o11.g1)
ACCAG304630AG304631
length722717
length of high quality
(start - end)
538 (39 - 576)444 (70 - 513)
definitionCHROMAT_FILE: MSMg01no084_o11.b1 PHD_FILE: MSMg01no084_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005CHROMAT_FILE: MSMg01no084_o11.g1 PHD_FILE: MSMg01no084_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGAATTC
ATTTAATATCCAAATAAAAGTTATAAAATGTTATATAACATGTCTATGTC
TTGTAAGGCTCCATACTGAAAGTTTTACACTAAGAAACTCTTAAATTATT
TAGAATAAAAATGTAAAATGAAGGCAAAACAGAAAAATTAAAGTAAAGTA
AATGTTTTTAAAAGGATATCACAGGCTGGGTGTGGTGGCACACACCTGTA
TCTCAGATTCTTGGAGGCTGAAGCAGAAAGATCTTTGTGAACTTGAAGCC
TGATCTAGATCTTGAGTTTCTGGCCAACCAGGGCTACACAATGAGACCCA
GTCTCAAGCAAGTAACAAACAAGTCACAGCACTAAACAAAGTACCTTTTA
AAAGGATAAATGGATCACTGTTGTTCCCATTATTATTATATTTTATATGT
ATGGGTATTTTGCATACATATATGTCTGTGTACCTAGTGCCCTTGGAGAC
CACAAGAGAGTATTGGATCTCCTGAAATTAAGGTTATAGATAGTTGTAAG
CTGCCATGTATGTGCTGGGAACTGAACCTGGGTCCTTTGAAAGTACAGCC
AGTGCTGTTAGCCATTGAGCCCTCTTTCTAGTCCCTAAACTTAAGGCTTG
GCTTTGTTTATCTAGTTTAGACCGATGACAAATACCTGAATACCTTTTCT
TTTTAGTAAAGATAGAATGGCA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAATGGG
TGTTGGATCTGGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
ATTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCTAGAATTTTATT
GAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGAGGCTTCA
TAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTT
GTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCATCTGGTCCTGAGCTTTTTTTGGTTGGGAGACTATTAATAACT
GCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATC
CTGATTCACTTTTGGACCTGGTATCTGTCCAGAAATTTGTCCATTTCTTC
CAGGTTTTCCAGTTTTTGTTGAGTATGGCCTTTTGTAGAAAGATCTGATG
GTGTTTTGGATCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o11.b1 MSMg01no084_o11.b1 CHROMAT_FILE:
MSMg01no084_o11.b1 PHD_FILE: MSMg01no084_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:03 2005
         (538 letters)



>mm_chr1_20914418_20915356
          Length = 939

 Score =  717 bits (371), Expect = 0.0
 Identities = 383/387 (98%), Gaps = 1/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatttaatatc-caaataaaagttataaaatgttatataacatgtctatgtcttg 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaattcatttaatatcaaaaataaaagttataaaatgttatataacatgtctatgtcttg 328

                                                                       
Query: 66  taaggctccatactgaaagttttacactaagaaactcttaaattatttagaataaaaatg 125
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaggctccatgctgaaagttttacactaagaaactcttaaattatttagaataaaaatg 268

                                                                       
Query: 126 taaaatgaaggcaaaacagaaaaattaaagtaaagtaaatgtttttaaaaggatatcaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaaatgaaggcaaaacagaaaaattaaagtaaagtaaatgtttttaaaaggatatcaca 208

                                                                       
Query: 186 ggctgggtgtggtggcacacacctgtatctcagattcttggaggctgaagcagaaagatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggctgggtgtggtggcacacacctgtatctcagattcttggaggctgaagcagaaagatc 148

                                                                       
Query: 246 tttgtgaacttgaagcctgatctagatcttgagtttctggccaaccagggctacacaatg 305
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 147 tttgtgaacttgaagcctgatctagatcatgagtttctggccaaccagggctacacaatg 88

                                                                       
Query: 306 agacccagtctcaagcaagtaacaaacaagtcacagcactaaacaaagtaccttttaaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  agacccagtctcaagcaagtaacaaacaagtcacagcactaaacaaagtaccttttaaaa 28

                                      
Query: 366 ggataaatggatcactgttgttcccat 392
           |||||||||||||||||||||||||||
Sbjct: 27  ggataaatggatcactgttgttcccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space:   490512
Effective search space used:   490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)