BAC Information

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BAC

Clone NameMSMg01-085E09
Chromosome1 (Build37)
Map Location 126,489,780 - 126,490,096
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998, Actr3, Slc35f5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085E09.T7 (MSMg01no085_e09.b1)MSMg01-085E09.TJ (MSMg01no085_e09.g1)
ACCAG304907AG304908
length2,6351,289
length of high quality
(start - end)
---318 (82 - 399)
definitionCHROMAT_FILE: MSMg01no085_e09.b1 PHD_FILE: MSMg01no085_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:49 2005CHROMAT_FILE: MSMg01no085_e09.g1 PHD_FILE: MSMg01no085_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAGTGATTGTAGAGTAATAAGATTTAAAAGAAGAAGGTATGGGATAATA
TTAGAAATATATATATATATAGTGGATAGAGAGGTATTGTGATGTGGGTA
TGTTNAGTGTATGTGTGATAAGAATTAGTGAAGTTATAATAGTATTTATA
TTAGAAAATATGTTTTGTGATAGATGGATGATGTATGTGTAGTGATTTGG
GGTATATGGTAGGAGGAGTAGATTGTGGTATGGAAGAGAGTAATAGAAGC
ACCCACTTTTTTGGGTGGTGAGTAAAGTGGAGTATGAGTAATTTGAGATG
TATGGTTATTATAATAGTAAGTAGGTGAATATGTGAGTATAAAGNATAAT
GTAGATTGATATAGATTAATTGAGATAGATTGGATGTGGTGAGNAAGAGA
TNTTTAGATGGTTAGTTGTTGTAAGGTTATGTGTGTGAGGTAAGAGTGTG
AGTATAAGAGGTTATTGTTAATTGTTAAGAGAATAGAATTGTAAAATATG
TTTAATATTTGATAGGTTTAAANTAAGATGAGATTAGATGTGTGTATATA
TATGATGGGGAGTGGAGTATATATATAAGTGAAAGAGAGATATAATTAAT
GGGTAAGATAATGTGAATGAATTAGAGTGGTATATTGGGTATTGTGAGTA
GATATGATTGTATGAGATTGAATATATGGGTTATAAGAAAGTGATTGTGG
TTGTATAATATGTGTCTGTGGGGAAGTTTGTTATATATAATTGATGTGAT
AGATAGTTAAGAGTAGATTTATAAGTAGGTATAGATGGAGTGTAAGAAGA
TATTAGAGTATATAGTGATTTATATTGAGTAGTAGAGTTAAGATTGAGGT
AAGTGGAATAATTAATTAGTTAGGAATATTGTGATGATGTGTTATATGAA
TTAATATATAAGAGTGTAATTGAAGTAGTTTTGTATATTATGTGATTAAA
TGTTGAAAGATAAGATATGTAATGAATGTGAGTAGTTTGTTGTGAGAGAT
TATTGTTAGAGTGAGATAGGTAAAGTTTTGTAGTGAGTATAAGTAGATTG
AATATGATTAGAGATATAGATTATATGATGTGTTTGTGGTGGTGTGCGAT
GGTAATATGTTAGATAATAAGAATATTGATATCATATAATAGTGTGGGTT
AAATGTACTTAAGTAAAGGATAATTGTTTAGGTGTGGTATGTGATTGATT
GTGTATAGTAGGTAATATATTGAGAGTATTAAATGAAGTGAGTGTTGGTA
TGTGGATAGTGTATGTTGCCCTTTGTATGGTATTAGTGAATTTTAATTAT
AGATGATTAAGATTATGAAATATTATAAATAGATAAAAGAATAGTTGTAT
GGATAGTAATTAATAGTGAATGTTGAAGAATAATGATAGAATGAATAGGA
GGTTGTAATATGTTGGTGAGTAAGATGTGATGTTATATATTATGGCGTAG
TAAAGGAATAATTATGGAGTTTAGAGTGTTATGAGGTAAGGAAGGTGATG
GTAATAATATGAATATAGTGTGTCTAGTATGTTNATATGTAATTCGAATA
AGTGTTTTAGGTACTAATTTTGTTAGAAGTAGAGGTGAATAAAGNCAGAT
GTGAGGTAGGGTGTATGATAGAGATGTAGTATTTGTGATGTTTGTGGTGG
TGTAAGATTGAAGTGAGTAGTATGGGAGAGGAAAATATAATTATTTGTGA
TATAATTAATGTAAGAGATGTATTATAGTAGTATGATGAGATAATGTGGA
GAGTGTGCTGATATAGTAAGGATAGAAGATGTAGAAGATGTAAGTAATAG
GTGTAGAGATAAATGTATGAGAGAGGTAGTGTTGTGAGTTGATTGAGATT
GAGAGATGATAGTAGTGTGTAGATGATTGATGGTTGTGTATGTTAGTATA
TGGAATGAAGGGTAATNATGAAGTGTGTGNTATCATGACTNAGTTGTAGA
TGTATGTAGTATGTAATGTGTATCATGTGTAATATATAGTAGGGATTAGT
AGTAGGAGTATAAATGTAGGTATGTTGTGNAGGTTGTGATAGTGGTGTAG
AATAGTATTATTTGTATGTGTATATATGTATGGNTGATGATAGAATAGGT
TATGATATGTAATGTGTTATGTATAGTGTGCAAGTGTGNTATACAAATGT
GTTATAATTATATAGTTAAATTAAGGTGTAATATAAGNTGATGATATATA
TTACTATATATGATATGTAGTAGATGATATNTGTATGTGATGTATGATTA
TAAATATGTTGAGTAGTATAATGAGTGTATATGTGGTTATGATTGTGAGG
TTACGTATGTAAATAGCTGTAATGTGAAGCATATAAGATTAGTTGTATAT
AGAATATAATAAGGTTGATATGTATAGTAGTGATGGAGTATTATTATGAT
GCATAGAATGTATATGTGATANATGATGTTATAATGTAATGATATATATT
ATGGTGCGATTTGTATATGCTAAAGGTAGTTATGTTTGAGTATATATAAT
ATNTATGTAGGAAGATGTTAGNTGTGTAGTGNAGTGTGTATGTANTTGTT
ATGAGNTTGTAGTGNGTGTAGTAGTGAATAGGTTAATGAGTTGTNATGNT
TNTGTTATGATGTGTTTGATATAGTGTATGTGAAG
TTCAAAGAAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTTTCACACATGAGTAAGTATTCAGAAATAAAAG
TTGCAAGCCTTTGAGAACCCCCCCCTACTGAGAAACACCTAAAACTAGTT
TATACAGAGAAAGAAACGAAAATTAGTGTAAAACCCTACAAAGAGAAGGA
AACTTAGCCTGAGAAGTTCTGGAGTTCAGAATACAGAAGGCACGCCTGAG
AAATCAGTGTCCCAGGTATAGTTTAGAAGGTCAAACCGGACAATCTTAAA
GCCAGCTCCAACATCAGGATACAGTGAAAATATTCCACTAACTTAAAAAT
CAGGACATTTTAGTGAGATTATGATTATTTTGTTTTCATCTTGAATAGAA
TTTTTTAGTTCTCACAGGTTTCCGTCTGCATTCACATATCTTCTAGAATC
TGGGCCACGTCTCCCACATCTCATTGCAGGACCGCTGTTCAGCAGTGGAT
GTCTCCAGGGTGTGAGCGTTATGCGCGAGGTGGTTGTTCCTTTTTTTTTC
TTTTTTTTTTCTCTTTTTTTATCTTTTTTTTCTTTTTCTTTTTTTTTTAT
TTCATATCTTTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTCTTTT
ACCTTTTAATTTTCTTTTTTTTTCACTTTTCTTTTCTTTATCTTTATTTT
TTTTATTCCCTTTTTTTTTTTTTTTCTTTTATCTCTTTCTTTTCTTTTTT
TCTCTCTTCTTTTTTTTCCTTTTTTTTTTTCCATTTTTTTTTTATTTTTT
TATTTTTATTCTTTTATTTTTTTTCCTACTCTTTTTTTCCTTTTTGTTTT
TTTTCTTCTTTCTTTTTCTTTTTTTTCTCTTTTTTTTCCTATCTTTTCTT
TTTTTACTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTATATCTTATTTTT
CTTTTTTTCATTTTCATCCTCTTTATTATTTTCTAACTTTACTTTTTTTT
ACTACATTTATTTATTATTTTTTTCGCCCTTTTCCTATTTTTTTTACTTT
TGTTTTTGTATTTTTTTTCTATTCTTCTTTATTTTTTGTTCTTTTCTCTT
TTTATCTTTATATCTTTATTTAATATTTATTTTTTCTTTTTTGTTCTTTT
ATCCACTTATTTTTTCCTTATATTTCTTTCTCTTCATTTGTTTTTATTAT
CTCTTTTTCTATTCTTTCCTTTTTATTTATTTATCTCTCATTTTACTCTT
TAATTTCTCTCTCTCTTCTTCTTCACTTCTACTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_e09.g1 MSMg01no085_e09.g1 CHROMAT_FILE:
MSMg01no085_e09.g1 PHD_FILE: MSMg01no085_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:49 2005
         (318 letters)



>mm_chr1_126489580_126490296
          Length = 717

 Score =  557 bits (288), Expect = e-163
 Identities = 310/322 (96%), Gaps = 9/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtattcagaaataaaagttgcaa----gcctttgagaacccccccctactgagaaaca 56
           |||||||||||||||||||||||||    |     ||||||||||  |||||||||||||
Sbjct: 517 aagtattcagaaataaaagttgcaaggagg-----gagaacccccagctactgagaaaca 463

                                                                       
Query: 57  cctaaaactagtttatacagagaaagaaacgaaaattagtgtaaaaccctacaaagagaa 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cctaaaactagtttatacagagaaagaaacgaaaattagtgtaaaaccctacaaagagaa 403

                                                                       
Query: 117 ggaaacttagcctgagaagttctggagttcagaatacagaaggcacgcctgagaaatcag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaaacttagcctgagaagttctggagttcagaatacagaaggcacgcctgagaaatcag 343

                                                                       
Query: 177 tgtcccaggtatagtttagaaggtcaaaccggacaatcttaaagccagctccaacatcag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgtcccaggtatagtttagaaggtcaaaccggacaatcttaaagccagctccaacatcag 283

                                                                       
Query: 237 gatacagtgaaaatattccactaacttaaaaatcaggacattttagtgagattatgatta 296
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 282 gatacagtgaaaatattccactaacttaaaaatcaggatattttagtgagattatgatta 223

                                 
Query: 297 ttttgttttcatcttgaataga 318
           ||||||||||||||||||||||
Sbjct: 222 ttttgttttcatcttgaataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)