Query= MSMg01no085_m09.b1 MSMg01no085_m09.b1 CHROMAT_FILE:
MSMg01no085_m09.b1 PHD_FILE: MSMg01no085_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:59 2005
(253 letters)
>mm_chr1_150926365_150927017
Length = 653
Score = 474 bits (245), Expect = e-138
Identities = 251/253 (99%)
Strand = Plus / Minus
Query: 1 ttaactgccttgtcattttgcaatgcctatgctttcttatagaaagtagatacaagttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttaactgccttgtcattttgcaatgcctatgctttcttatagaaagtagatacaagttgg 394
Query: 61 ggatcgcctgtaggtccatgagactgtttatggcacttatatctcagttcacacccacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggatcgcctgtaggtccatgagactgtttatggcacttatatctcagttcacacccacat 334
Query: 121 tatcgtatttctacaataagtaaacccaacttcaacgtataatgttccgcgtcaaaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 333 tatcgtatttctacaataagtaaacccaacttcaacgtataatgttccgtgtcaaaaagt 274
Query: 181 gctttctacaatgaaccatatcatatataactaaaaataggcattaagatatcaccaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gctttctacaatgaaccatatcatatataactaaaaataggcattaagatatcaccaatg 214
Query: 241 ataggggttaaga 253
|||||||||||||
Sbjct: 213 ataggggttaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no085_m09.g1 MSMg01no085_m09.g1 CHROMAT_FILE:
MSMg01no085_m09.g1 PHD_FILE: MSMg01no085_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:00 2005
(272 letters)
>mm_chr1_150778238_150778909
Length = 672
Score = 431 bits (223), Expect = e-125
Identities = 251/263 (95%), Gaps = 5/263 (1%)
Strand = Plus / Plus
Query: 7 ccatggctaggctaatgaagcaggtacttgctttaatattggaagacatactcagtgtta 66
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 207 ccatggctaggctaatgaagcaggtacttgttttaatattggaagacatagtcagtgtta 266
Query: 67 acacaatcgtcaatttcgcataaccatgtttaaacagaaaagacagagtaaagtacagca 126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acacaattgtcaatttcgcataaccatgtttaaacagaaaagacagagtaaagtacagca 326
Query: 127 ccaaaacaaaacaaaacaaaacaaaatacaactacatttgcataaaaccacctagccctg 186
|||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 327 ccaatacaaaacaaaacaaaataaaa-----ctacatttgcataaaaccacctagccctg 381
Query: 187 atgagaggggcagctttgtggcactcactgagataaatgaaccaaacatggatataattg 246
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 382 atgagaggggcagctttgtgggactcactgagataaatgaagcaaacatggatataattg 441
Query: 247 aactcaaaagatttaagccatat 269
|||||||||||||||||||||||
Sbjct: 442 aactcaaaagatttaagccatat 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
