TATGCGGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTA
TAAATGTATCCCACTTTAGAGCTTGGCATATAACAAATAAGCCAGGAAGA
ACTTCCTTAACATTAATGTTGTAAGTGTGGGAATTACACACCAGAGTTGT
TTTGAATGTTACATGCCTCTGGTGCATAGAGAAGCACAAAGCCAAATGTC
ATTTGCTTTCAGTGTCTTAAAAAAAACACCTAGAATTAGAACTCTCGAGA
TCCTACTGAATTTCATTGTCAGCCTGATTCCTTCAAGGTAACAATCATGG
TGAGTGGGAATATAATCTATAGGCAAAAGGTGGTTCCTGTTAAAAAATAA
CATTACGTCTGTTGTGTGCGTAGAACAGAGGAAAGAAATTGCATATTTTT
TCCATGGCTTTGAGAATTCCATATAGCTTTCAGCTTTACTTTGCAATGTG
CTTAAATGAAAGAAAAATAATCCAAAATGCTTTCTTTCATAAGAATGTAA
AGCTAATGACTGACCTTTGTGAGTGGCCATATTTTTTCTTGAATAGCTCT
TTATTTAAGGACTAACACATCTTATTTTTCAATTGTCAATATCTGACTGC
ATTATGATATATAACTGTGAGATACCTTCCTTATATTATTTTTTAGGATA
TAAGTGTTTTTTCAATTATCTATCTGATCCTTAATGCCCTATTATATACT
GATACTATGTTTTATCTTGTTTTATTAATTCATATTTTATTTTACTACTA
AATCTTTCTTTCCTGATTATTTTTTTCTATTTGCTTATGTTTCTTTCTTT
CTTTTTCTTTCCTTAACTTCTTTTAACTCTCTTTCTTCATCTCTCTTTTT
TTACTCTTTGTATTAACTTTTTCTACTCCTTCCTCATCCTTGCTTTATTA
TTTCTTTTATTCTCTTTTCTATTTCATTCCTACTATTTCTTATAATATTC
TCCTTTTACTCTATCCCTCTCTTTTATTTTTCTTTCTTTATCTCTAATTC
TCTCCTATTCCCTTTTTTTCTTTCATTCATTTTCTTTCTATTTCCTATTT
ATACTTTCACTCAACTTCTCTTATCTCTTCTACATTCTCTCTTCCTTCTC
CTCTTTCTCTTTATCTTCCTCATATTCATTTCTATTTTATCTTTCTTTCT
TTCACTTATTATCACCATTAGTAATCTGTTACCTCTCTCTCTACTTCATG
ATCACC

AGACGGNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTTTTAAACTTAGAACCTATTATCTTAGTAATTTATTC
ATTTCTTTGAAATATATAGGTAATGATCATACTGCAAATAATATTTCACA
TCCCTTATTCAATTAATATTAAGTTTTATTAATGTTAGTCATTTAGAATA
TGGATATTTTTTCTTTAATGATAGTCATAATGTAGGACAAGATACAGTCT
AAGAAGGTATCTAACAAATTTCATTACACTTACATCTCAGCTACATAATT
ACTTATAGACTACATGATTACACTTTGAAATTTATAGAACTATAAGGAAT
ATAGGTTGTTTAATATAAAATAAGAATGTTGTAAAATTCTCATTTTATTT
TTGAGTCATTTTCTGAGGTTTCCCTTCAAACTGAAGAGTTTTACCCCTTT
CTTAATGTCATAAAGTCATGACTCCAAGCTCCTTTAGGCATTACTGGCCA
TTTAGATGTACAGCGAAGCTTCATTGGTGATACCCTTTAAACTACTTATG
AATACTTTCAGGAAAAAATTCAGGGGCACATTTCTTTAACATTTACTTTG
CCAGTGCCCAACAATTTTACACAAGAAATATTAAAAACACCAGCTATCAC
ACAAACATTACCCCAGACCACAAAGATCATAATTAAAATGGACCCATTTT
TAGTGTCTCTTTTTTCATTAAAAAAAATCTAATACTTAATCAACATAACT
TCTTATCTTATTATTGTATATCCTTGAAATATGCAGTCCTTTTTACCAAT
TAAGGATAAATATTAACCTTGTTCCCTGATTTTCCCTGTTTCAATCCTCT
TTTCCTTCCTTGCCGAGTTTTTGTGATTTCTCTCTGTTTAATTATATATT
CTATTTTTTATTTTGATATTATTTATTTTTTCTTTTCCTTCTCTTTTTTT
TTCCATCATCTTTTTTTTTTTATTTCATATTTTTTACTCTTTTCCTTATT
ATTTCTTCCTCTCTTTATTTTATATTATTCTTTTTTCTTCGTTTCTTCTT
TTTCTTACACTATTATTCTTCTTCATTCTCTTTCTTCTATTCCTTATTTT
TTTTATATCTCCTTCCTTCTATCCTTTTTTACTTATTTCCTCTTTTCTTT
CTTTTCTTTTCTCATTCCCTTACTTTAT

Query= MSMg01no085_n01.b1 MSMg01no085_n01.b1 CHROMAT_FILE:
MSMg01no085_n01.b1 PHD_FILE: MSMg01no085_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:06 2005
         (486 letters)



>mm_chr1_68761869_68762754
          Length = 886

 Score =  855 bits (442), Expect = 0.0
 Identities = 475/486 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatataacaaataagccaggaagaacttccttaacattaatgttgtaagtgtgggaatt 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 686 gcatataacaaataagccaggaagaacttcaataacattaatgttgtaagtgtgggaatt 627

                                                                       
Query: 61  acacaccagagttgttttgaatgttacatgcctctggtgcatagagaagcacaaagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acacaccagagttgttttgaatgttacatgcctctggtgcatagagaagcacaaagccaa 567

                                                                       
Query: 121 atgtcatttgctttcagtgtcttaaaaaaaacacctagaattagaactctcgagatccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgtcatttgctttcagtgtcttaaaaaaaacacctagaattagaactctcgagatccta 507

                                                                       
Query: 181 ctgaatttcattgtcagcctgattccttcaaggtaacaatcatggtgagtgggaatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgaatttcattgtcagcctgattccttcaaggtaacaatcatggtgagtgggaatataa 447

                                                                       
Query: 241 tctataggcaaaaggtggttcctgttaaaaaataacattacgtctgttgtgtgcgtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 446 tctataggcaaaaggtggttcctgttaaaaaataacattacgtctgttgtgtgtgtagaa 387

                                                                       
Query: 301 cagaggaaagaaattgcatattttttccatggctttgagaattccatatagctttcagct 360
           |||||||||||||||||| |   ||||||||| |||||||||||||||||||||||||||
Sbjct: 386 cagaggaaagaaattgcagaagctttccatgggtttgagaattccatatagctttcagct 327

                                                                       
Query: 361 ttactttgcaatgtgcttaaatgaaagaaaaataatccaaaatgctttctttcataagaa 420
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 326 ttactttgtaatgtgcttaaatgaaagaaaaataatcaaaaatgctttctttcataagaa 267

                                                                       
Query: 421 tgtaaagctaatgactgacctttgtgagtggccatattttttcttgaatagctctttatt 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 266 tgtaaagctaatgactgacctttgtgagtggccatattttttcttgaagagctctttatt 207

                 
Query: 481 taagga 486
           ||||||
Sbjct: 206 taagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no085_n01.g1 MSMg01no085_n01.g1 CHROMAT_FILE:
MSMg01no085_n01.g1 PHD_FILE: MSMg01no085_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:06 2005
         (567 letters)



>mm_chr1_68628195_68629161
          Length = 967

 Score = 1064 bits (550), Expect = 0.0
 Identities = 562/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacctattatcttagtaatttattcatttctttgaaatatataggtaatgatcatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacctattatcttagtaatttattcatttctttgaaatatataggtaatgatcatact 260

                                                                       
Query: 61  gcaaataatatttcacatcccttattcaattaatattaagttttattaatgttagtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaataatatttcacatcccttattcaattaatattaagttttattaatgttagtcatt 320

                                                                       
Query: 121 tagaatatggatattttttctttaatgatagtcataatgtaggacaagatacagtctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaatatggatattttttctttaatgatagtcataatgtaggacaagatacagtctaag 380

                                                                       
Query: 181 aaggtatctaacaaatttcattacacttacatctcagctacataattacttatagactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtatctaacaaatttcattacacttacatctcagctacataattacttatagactac 440

                                                                       
Query: 241 atgattacactttgaaatttatagaactataaggaatataggttgtttaatataaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgattacactttgaaatttatagaactataaggaatataggttgtttaatataaaataa 500

                                                                       
Query: 301 gaatgttgtaaaattctcattttatttttgagtcattttctgaggtttcccttcaaactg 360
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatgttgtaaaattctcaaactatttttgagtcattttctgaggtttcccttcaaactg 560

                                                                       
Query: 361 aagagttttacccctttcttaatgtcataaagtcatgactccaagctcctttaggcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagagttttacccctttcttaatgtcataaagtcatgactccaagctcctttaggcatta 620

                                                                       
Query: 421 ctggccatttagatgtacagcgaagcttcattggtgataccctttaaactacttatgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggccatttagatgtacagcgaagcttcattggtgataccctttaaactacttatgaat 680

                                                                       
Query: 481 actttcaggaaaaaattcaggggcacatttctttaacatttactttgccagtgcccaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 actttcaggaaaaaattcaggggcacatttctttaacatttactttgccagtgccaaaca 740

                                     
Query: 541 attttacacaagaaatattaaaaaca 566
           ||||||||||||||||||||||||||
Sbjct: 741 attttacacaagaaatattaaaaaca 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)