BAC Information

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BAC

Clone NameMSMg01-085P11
Chromosome1 (Build37)
Map Location 154,207,066 - 154,207,559
singlet/doubletsinglet
Overlap genenone
Upstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085P11.T7 (MSMg01no085_p11.b1)MSMg01-085P11.TJ (MSMg01no085_p11.g1)
ACCAG305403AG305404
length1,2281,114
length of high quality
(start - end)
494 (73 - 566)275 (59 - 333)
definitionCHROMAT_FILE: MSMg01no085_p11.b1 PHD_FILE: MSMg01no085_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:28 2005CHROMAT_FILE: MSMg01no085_p11.g1 PHD_FILE: MSMg01no085_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTG
CTCCAGCTGGCCCATTAAATGATAAAAACCTCAGCCAAAGTCTCCACTGC
AGCCCCTTAAAAAATCCGAAGTCAGAACCATGTTCTTAAAAACTGCTTCC
ATATTTCTGAACCACAAAGCCACTATTTGTGATCTGGATATTGTAAGCTG
CAGAACTGGGGAAATTTGTCACACAATAGATGACTATAAAATACCCATGA
CATTTATATTCTTTCCACCCTCATAAGAGGACAGGGAAAGAGAGTCTGCT
AAGATGTTTTCCTTGCATATATATCAAGATCTGCTGTAAAAGCATACTCT
TTTAGATATTTTCTTTATTCACATTTCAAATGTTATCCCCTTTCCTGTTT
TTCCCTCTGACAATCCCCTATCCTATCCATCCTCCCCCTGCTTACCAACC
CACCCACTCCTGCTTCCTGGCCCTGCAACTCCCCTACACTAGGGCATAAA
ACCTTCACAGGACCAAAGGTCTCGTCTCCCATTGATGACTGACTAGGCCA
TCTTCTGCTACATAGGCAGCTGCAGCCATGAGTCCCACCATGTATGTACT
CTTTGCTTGGTGTTTTAGTCCCTGTGACCTCTGTGTTTACTGCTTAGTTC
ATATTTGTGTTCCTCCTCTTGTGCTTCCACTCCCTTTAACTCCTTGTTTC
CTTTCTCTAGCTCCTTCCTTGCTAATCCTGTGCTCCTTTCTAAGTTTACT
TCGTGCTCTTCCACTTCTGTTTCTGTCTAGTCTCTGTTATATCCTTCTCA
TATCCTTTTTATTCTATGTTTTCTTCTCTTTACTATCTTGTTGTTATCCT
TTTTTTTATTTTTTTCTCTTGTTTTTTTAATTATTTAAATTCTTCCCTTT
TATATTTTTTTTTATATTTTTTATTATTTTTATTATTATTATTTTTTTTT
ATTTATTAATTTTTATCTATTTATCTTTATATTCTCTTTTCTATTACTCT
TCTCTTTTCTTCTATTATCTTCCTTTCTTTTATTTTTCTAATCTACTTTT
CTTACTCTCTTCTTTTATCTCTCTTCATTCGCACTCTTTTTTATTCATTA
TTTGTGTACTCCTATATTTATACTTTTCTTCATTCTCTTTTCATATCCTG
TTTCTTCTATCTTTTTTACTTCTCTTCTCTCTCTTTCTCCTAAATACTTA
TTCTCTCTATATAATCCACTGTCTATCT
TCTTTAAAGCGCCCTAATTTACTCTTGCTAGACAGGTCATACCTTGAAAG
ACATAATACTGCTATTATTTTGCCAAATGGATGAAATATTAAACTTATTC
CCAATGACTTATCATTATATCTACAGGTCAATGCATCCCTTGGGCCTCAT
CCGAAAAGCATCTCTTTGCGGTAGACATTGATGAACACAGAGACCCACAA
ATGGCCAAGGTGCAGAGAACAAGAGACTGTGGAGTGTCCAGGCCTGAATG
GAGTACGTATACCCCACCCTCCTCGATAGTCTCAGGGATCAGTGCACAAG
AGGGTCCAAGGAGAGTGTATGATGGTGGATAATTTTTTTGATGCAGTGTC
TTTTGGACACAGCAGGGAAGTTGTACAAAACTCACACTGGTTGCAACATC
GTACACAAAATTTGTGCATGGAGCTGAGAGATGAACCCATGCTCCCACCC
CATGCAGTGGAGAGGTTGGTTTCAGTGACAGGCTATGATTTTCTCAACAG
CTGCCCTGATCCTGGCACCCAATGAAAGGTGTGCAGGTATGGTCGTGAGT
TTTCTTCCTCTTTCCCTAATTCTTATTTTCTTTCTCATTTTATTTTCTCT
TTTCTCTTTTTCTTTACTCTCTTTCTTTTCTTTTTCTTTTTTCTATTTAT
TCCCTTTTTCTTTTCTTCTATCTTTTTCCCTTTCTATCTTCTCATATACT
TTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTCATACTTATCACTCTATA
TCTTTTATTTCTCTATTTTTCATTTCTACTTTTTTTTCTACTTCTTTTTT
TTCTATTATTTTTTTTTTTTCTTCCCTTTTTTCCTATTATTTTATATCTT
TACTTTTTTCTTTTCTCTTTTCTCCTTTCTTCTTCCTTTTTTTCTTTCCT
TTTCTATCACTCTATTTTATTCTTTTTTATTCTTTTTTCTATCATATTTT
ATCTTCTCCTTCTCTTTTTCTCTTCCACTTTTATTTTCATTCTTTTCTTT
TATTTCTTTCCTTATTTTTTTCTTTCTTTTTATACTTTTTTATCATACTT
ATTTCTCTCTCTTACCATTATCTACTTTTTCTCGTCCTCTTTTATTTATT
TTTTTCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_p11.b1 MSMg01no085_p11.b1 CHROMAT_FILE:
MSMg01no085_p11.b1 PHD_FILE: MSMg01no085_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:28 2005
         (494 letters)



>mm_chr1_154206866_154207759
          Length = 894

 Score =  903 bits (467), Expect = 0.0
 Identities = 488/495 (98%), Gaps = 2/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaacctcagccaaagtctccactgcagccccttaaaaaatccgaagtcagaaccatg 60
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 201 taaaaacctcagccaaagtctccactgcagctccataaaaaatccgaagtcagaaccatg 260

                                                                       
Query: 61  ttcttaaaaactgcttccatatttctgaaccacaaagccactatttgtgatctggatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttaaaaactgcttccatatttctgaaccacaaagccactatttgtgatctggatatt 320

                                                                       
Query: 121 gtaagctgcagaactggggaaatttgtcacacaatagatgactataaaatacccatgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagctgcagaactggggaaatttgtcacacaatagatgactataaaatacccatgaca 380

                                                                       
Query: 181 tttatattctttccaccctcataagaggacagggaaagagagtctgctaagatgttttcc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tttatattctttccaccctcataagaggacagggaaagagaggctgctaagatgttttcc 440

                                                                       
Query: 241 ttgcatatatatcaagatctgctgtaaaagcatactcttttagatattttctttattcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcatatatatcaagatctgctgtaaaagcatactcttttagatattttctttattcac 500

                                                                       
Query: 301 atttcaaatgttatcccctttcctgtttttccctctgacaatcccctatcctatccatcc 360
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 501 atttcaaatgttatcccctttcctggttttccctctgaaaatcccctatcctatccatcc 560

                                                                       
Query: 361 tccccctgcttaccaacccacccactcctgcttcctggccctg-caactcccctacacta 419
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 561 tccccctgcttaccaacccacccactcctgcttcctggccctggca-ctcccctacacta 619

                                                                       
Query: 420 gggcataaaaccttcacaggaccaaaggtctcgtctcccattgatgactgactaggccat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggcataaaaccttcacaggaccaaaggtctcgtctcccattgatgactgactaggccat 679

                          
Query: 480 cttctgctacatagg 494
           |||||||||||||||
Sbjct: 680 cttctgctacatagg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)