BAC Information

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BAC

Clone NameMSMg01-086G12
Chromosome1 (Build37)
Map Location 11,763,170 - 11,763,486
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneLOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086G12.T7 (MSMg01no086_g12.b1)MSMg01-086G12.TJ (MSMg01no086_g12.g1)
ACCAG305726AG305727
length681707
length of high quality
(start - end)
336 (47 - 382)240 (56 - 295)
definitionCHROMAT_FILE: MSMg01no086_g12.b1 PHD_FILE: MSMg01no086_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:08 2005CHROMAT_FILE: MSMg01no086_g12.g1 PHD_FILE: MSMg01no086_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTAATTCAAGAAGATGCGCGGAATTCCTAGGTTCCGAATTCAAATGT
GTTTGTCAAGATGGGTGTCTTGGGGACATCATCTTCAAGTGTGGGTATTG
ATGGACTTTGGAGGTAGTTTTTGGAGGATAATAATGGTTAGCAAGGGCAT
GGCACTGGAGCCTTCCTTGGATGACTTTATAAGAAGAACAGGTCTGGAGA
GATAGGTCAGTAGATAAGAGCTCTGTTTGTTCTTCCAGAAGACTGGGGTT
CGGTTCTCAACATCTCTATGGTAGCTCACAACTGTCTGTGACTGTGTCTC
CAGTCCCAGATGATCTGGCATCATTTTCTCACCTCCACAGGTACTGCATG
AACACGATGCATATATATATATATATATATACATATATACATATATATAT
ATATATATATATGAGGTCAAATCACACATACACGTAAAAAGACAAACATT
TTTTTAAGCATAGAAAAGTAGAGTTAACACACTATTTCTTTGCACCATGA
ATTCGATCTTGTCGTATCTCATACGTCACTGGATAACTAACTGTTAAAGT
AAAGGGCCCCCTTACCAAAACCTAACTCATACATATGGCACTGTCAACAT
TTTGGTACGCATATTCCTGCCTTTCTTGGTCTCCTAACTTGAGAGAAATG
CCCTCCCTCCTGCGATATGATATTCTCGCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTAACTTCCCAAGATTTTTATTAGGAATGGGTGTTCGATTTTGT
CAAACACTTTCTCAGCATCTAATGAAATGATCGTGTGTGGTTTGTTTTTA
TTTGAGTTTGTTTATATAGTGGATTATGCTGATGGATTTCCATATATTGA
ACCATTCCTGCACCCCTGGGATGAAGCCTACTTGTTGTTTTGTTGTGTTC
TTGGATTCGGTTTGCAAGAATTTTATTGAGTATTTTGCATTACTATTCAT
AATAGATATTGTTATGAAGTTCTCATTCTTTGTTGGATTTTTTTGTGGCT
TATGTATCAGAGTACTTGTGGCTTCATAGTACGAACTGGTGAGCGCCCCC
TCTTATTTCAATTTTGTGCAACAACTCGAACAGTATCGCTATCACTTTTC
CCTTTTACCCCCCCCTCTTCCTTGCCTTCCCCTATCTGTTACCCCATTCA
TCTTTGCTTCCCCAGACTTCTACTGCTTCTATTTCCCTTCTCTTACTACT
TTCTGCCATCTTCCCATTCTTTTACCCTCTCTCCCTCTCAACTCATCTAA
TAAACACCTATATTTTCCTCTCTATCTTCTCTTCCTTATCTCTCCTCACC
TCCTTCCCCCCCACCCTCCCTCCTTTTTNCTCCCATCTCCCATATTCACA
ACTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_g12.b1 MSMg01no086_g12.b1 CHROMAT_FILE:
MSMg01no086_g12.b1 PHD_FILE: MSMg01no086_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:08 2005
         (336 letters)



>mm_chr1_11762970_11763705
          Length = 736

 Score =  555 bits (287), Expect = e-162
 Identities = 312/323 (96%), Gaps = 6/323 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgtttgtcaagatgggtgtcttggggacatcatcttcaagtgtgggtattgatggac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atgtgtttgtcaagacgggtgtcttggggacatcatcttcaagtgtgtgtattgatggac 260

                                                                       
Query: 61  tttggaggtagtttttggaggataataatggttagcaagggcatggcactggagccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaggtagtttttggaggataataatggttagcaagggcatggcactggagccttcc 320

                                                                       
Query: 121 ttggatgactttataagaagaacaggtctggagagataggtcagtagataagagctctgt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtgactttataagaagaacaggtctggagagataggtcagtagataagagctctgt 380

                                                                       
Query: 181 ttgttcttccagaagactggggttcggttctcaacatctctatggtagctcacaactgtc 240
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttcttccagaggactggggttcgattctcaacatctctatggtagctcacaactgtc 440

                                                                       
Query: 241 tgtgactgtgtctccagtcccagatgatctggcatcattttctcacctccacaggtactg 300
           |||||||    ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgact----ct--agtcccagatgatctggcatcattttctcacctccacaggtactg 494

                                  
Query: 301 catgaacacgatgcatatatata 323
           |||||||||||||||||||||||
Sbjct: 495 catgaacacgatgcatatatata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)