BAC Information

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BAC

Clone NameMSMg01-086H12
Chromosome1 (Build37)
Map Location 68,906,232 - 68,906,583
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086H12.T7 (MSMg01no086_h12.b1)MSMg01-086H12.TJ (MSMg01no086_h12.g1)
ACCAG305771AG305772
length700680
length of high quality
(start - end)
---352 (56 - 407)
definitionCHROMAT_FILE: MSMg01no086_h12.b1 PHD_FILE: MSMg01no086_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:13 2005CHROMAT_FILE: MSMg01no086_h12.g1 PHD_FILE: MSMg01no086_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCAATTTCGAGAGGATCCGCGGAATTCTCTCCTGTTGCATAACAAATG
GATGACAAGCTCCTGATTCAATGTTCAACATACCTTAATCATCAGTGTAA
CCGCGAAGCAAAACAACCCTGACATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACATGTATATGCTGTGAAGGATGCGGAGAA
AGAGGAAGACTCAGAATATATTTTAACACCTTCGTGCTTCGAAAGATGTA
CAGCCACTTCTTTCTAAGTCATCTCTAATTCAGAATACTGATGCTGCTAG
ATTGTTCATCAGTGCTCTTATATACAACCAGAGGCATATGCTTAATATCT
GCCCCTCGTTATTTGCCAAGAGAACAGCTGCAGCAGTGTTGTCCTTGTCC
GCCGAATCTCATTCCCCGTGCAGGATGTTGTTAGAGGATAACATTAGTGC
TTCTCTCCTCACCGATCTTTACTTTCATCCATTATCTCAACTATGATGAA
TACTGATAGTTACTTGCTCTTTCATTGTTCCTTCCCTCATAGTCCCACAT
TTTACTATTTTCCTACTGTTTTCTATATGATTACTATTATGCCCCCCCTT
TTTGTTTTCCCTACCTTTTCTCTTATCCCTTACCTTTCCGCCCCACCTTT
TCTCCCATCTAAACTGCTTTGCCATCCTCCTCCTACTCCGTCTTCGTCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTACACAATCAGTATTTTCCCCAATACCTCAGACTTATTTCAAAA
CATAATGTAAGATAGATTAATAACTATTTCTCAACATTTATGGAATTAGT
ATTTAATATGTATTGTTTTTATTTAAATGGCACTCTTATAGCATGGCAAT
TGTATTTTAAAGCAGATTGACAACGCGCAGTGATAAATTATCTTGAGTGT
TTCAACTATAAACTGTAAACAGTACCCATGGAAGCTTACTGCAGCGCATC
AAGCCTCCTGCTGTATAGAGCCCTTCATAATTTGCCTTCCAGGAATATAC
AGTGCATGTTCTTGGGACAGTTCCACTTGGCCCAATCCCATTTTCCAGTC
CAGTGAGCCTAATGGCAGGCCTGAAATGAGATGTGTCTATGTGCTTTTGG
TAATTACTAGGTATATGTTAATGAAAAGCTTCTCCTTGTCCTTCCACCCA
GCACTGTTAAGTGTGACCGGTGATCATTTTTCCTGCTGAAAGAAAAGCCC
CCAACAGGGCTTGATCCCCCTAACGGAGTACAAGGATATACCTACTCTCA
AATGAAACCCTCTGTATCCCTTTGCAATTGAAATAACTGGATAACTTACA
CATTCCCTATATACCCATCATAAAAATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_h12.g1 MSMg01no086_h12.g1 CHROMAT_FILE:
MSMg01no086_h12.g1 PHD_FILE: MSMg01no086_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:13 2005
         (352 letters)



>mm_chr1_68906032_68906783
          Length = 752

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacacaatcagtattttccccaatacctcagacttatttcaaaacataatgtaagatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctacacaatcagtattttccccaatacctcagacttatttcaaaacataatgtaagatag 493

                                                                       
Query: 61  attaataactatttctcaacatttatggaattagtatttaatatgtattgtttttattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attaataactatttctcaacatttatggaattagtatttaatatgtattgtttttattta 433

                                                                       
Query: 121 aatggcactcttatagcatggcaattgtattttaaagcagattgacaacgcgcagtgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatggcactcttatagcatggcaattgtattttaaagcagattgacaacgcgcagtgata 373

                                                                       
Query: 181 aattatcttgagtgtttcaactataaactgtaaacagtacccatggaagcttactgcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aattatcttgagtgtttcaactataaactgtaaacagtacccatggaagcttactgcagc 313

                                                                       
Query: 241 gcatcaagcctcctgctgtatagagcccttcataatttgccttccaggaatatacagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcatcaagcctcctgctgtatagagcccttcataatttgccttccaggaatatacagtgc 253

                                                               
Query: 301 atgttcttgggacagttccacttggcccaatcccattttccagtccagtgag 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgttcttgggacagttccacttggcccaatcccattttccagtccagtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)