BAC Information

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BAC

Clone NameMSMg01-086K08
Chromosome1 (Build37)
Map Location 117,431,607 - 117,431,953
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K08.T7 (MSMg01no086_k08.b1)MSMg01-086K08.TJ (MSMg01no086_k08.g1)
ACCAG305899AG305900
length710673
length of high quality
(start - end)
369 (35 - 403)502 (55 - 556)
definitionCHROMAT_FILE: MSMg01no086_k08.b1 PHD_FILE: MSMg01no086_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:28 2005CHROMAT_FILE: MSMg01no086_k08.g1 PHD_FILE: MSMg01no086_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGTG
ATGCCGAAGCTGGTAAATTTCATTTACTACTGATACCCTACTAAGTCACT
TAGCCACAGACATGCTCCTTTGAACATAATCACCACCCTCACCCATATCT
AACTGCTTCTCAACTCATACCTAGCCAATACATCACATTTCACAGCCCTC
GTGTTCTCTCCTTCTTACACCATGGAAACTTGCTATGTTTGAATGTGGGG
AAGATTTTTACATGAATTTTCTCCTCCAAAGAATTCGTATTCATTTTAGT
CTTCCTTCCTCCTCCTTTGCTCTTGCCCTTCTCTGTATTTCATAAATGTT
CCCACCAATAAAAAAAATTGTGTGTATGTGTGTGTATGTGTGTGTGTGGT
TGTATGCGTTATTGCGTCCCCTTTTCCCTCTACCCCTTCCTCTCCTTTCC
TTCTCCCTTTTCCTTTTTTTTTCTCCCTCCCCCTCATTCCCTTACTCTTA
TCTCTCCCTCTTATCCCCTATCCTTCTTTTTCTATTCTCCCATATATACC
TTTTTTTCCCCCTCAATCCTTTTTCCCATTTACCCTCTCCCCCTCCCCTA
CTTTCTCTCCCCCCCTCCCCTTTATCTTTTCCCCACCTCTACCTTCATTA
TTCTTACCTTTCCTTTTCATCCCATCCCCATCTTATCTCTTTTTTTTTTT
TTCCCCCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTGATCTTTCCAGACTTTTATCATGAATGGTTGTTGGATCTTGTCG
AATGCTTTTTCTCCATCTAACAAGATGATCATGTAGTTTTTGTCTTTGAG
TGTTCCTATAATGGATTGCATTGATAGATTTCCCTATATTAAACCATCCG
TGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGTATTTTTGCATCAA
TATTGATAAGGGAAATTGATCTGAAGTTCTCTATCTTTGATGGATCTTTC
TTTCGGTGGTTTAGATATCAGAGCAATTGTGGCTTCATAGAATGAGTTGG
GTAGAGTACCTTCCACTTCTATTTTGTGCAATACTTTGTGCAGAACTTGA
ATTACATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGATGGGAGACTATTAATGACTATTTCTATTTCTT
TACGGATATGGTACTGTTTAAATTGTTAACTTCATCCTGATTTAACTTTG
GTACCTGGTATTTGTCTAGAAATTTGTTCATTTCGTTCGGATTTTTTAGT
TTTTGTTGCATATCAGCTTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k08.b1 MSMg01no086_k08.b1 CHROMAT_FILE:
MSMg01no086_k08.b1 PHD_FILE: MSMg01no086_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:28 2005
         (369 letters)



>mm_chr1_117431403_117432171
          Length = 769

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggtgatgccgaagctggtaaatttcatttactactgataccctactaagtca 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtgatggctaagctggtaaatttcatttactactgataccctactaagtca 264

                                                                       
Query: 65  cttagccacagacatgctcctttgaacataatcaccaccctcacccatatctaactgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttagccacagacatgctcctttgaacataatcaccaccctcacccatatctaactgctt 324

                                                                       
Query: 125 ctcaactcatacctagccaatacatcacatttcacagccctcgtgttctctccttcttac 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ctcaactcatacctagccaatacatcacatttcacagccctcatgttctctccttcttac 384

                                                                       
Query: 185 accatggaaacttgctatgtttgaatgtggggaagatttttacatgaattttctcctcca 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accatggaaacctgctatgtttgaatgtggggaagatttttacatgaattttctcctcca 444

                                                                       
Query: 245 aagaattcgtattcattttagtcttccttcctcctcctttgctcttgcccttctctgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaattcgtattcattttagtcttccttcctcctcctttgctcttgcccttctctgtat 504

                                                          
Query: 305 ttcataaatgttcccaccaataaaaaaaattgtgtgtatgtgtgtgt 351
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcataaatgttcccaccaataaaaaaaattgtgtgtatgtgtgtgt 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)