CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTGATTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAC
GTCCCATTTGTCAATCCTCGATCTTAAAGCACAAGCCACTGATGTTCTAT
TCAGGAATTTTTTCGCTGTGCCCATATCTTCGAGAGTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTGGATCCA
CTTAAATTTGACCTTAGTACAAGGAGAGAGGAACGGGTCGATTCACAATC
TTCTACATGATAACAACCAGTTATGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCACTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CATGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTG
TAGTAAAACTTTAGGTCAGGCATGGTGATTCCACCAGAGGTACTTT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCTTTTCTTTGTCATTCAGAGATGCC
ATTAAGACATTCAAAAGACCAGAGAGTTGGAGATAATTGTATTTTATTCA
ATTCAATATGATTTTTACTTTATATTCACATTACTGGAAGTGGGTGAGCA
CTTTCTTACCCATGGTCATAATATCTTCTCTTCTTCTCTCCCTCATGCTG
TCCATGGCATAGTCAGTCATGCAGTAAAAGATGTAAAACCATTGCACATT
TTTAGTTACATTGGAAAACGTGCTTATAGAACCCATTAGTAATTGTGAAA
GGTGCTGAGATAATTTCTGGGTGTCAGAATCTTAGATCAGCTGAAACCAT
GATGATTTTGTAAAGGTCATTGTAAACATATTGATGAGTATGCACATGCT
GTGGGCCATTGATTATATCTGGTAAGCAACTTTATTGTATTTTCGGGAGT
GCTGTGAGTTCAAATGTTTTACAACATTATCTGGTTTAATCTAATTTTTT
TGTTACCTTGTTTTATTGTCAATACACACACACACACACACACACACACA
CACACATATATATATATATATATATACTTTTAAAAAGATCAGTGGTTAAG
ATCAAAGTTATTAAATTAGTTCTAGAAGAATCTGTTCAATTTCTCAGCN

Query= MSMg01no086_m03.g1 MSMg01no086_m03.g1 CHROMAT_FILE:
MSMg01no086_m03.g1 PHD_FILE: MSMg01no086_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:37 2005
         (608 letters)



>mm_chr1_148750705_148751716
          Length = 1012

 Score = 1052 bits (544), Expect = 0.0
 Identities = 589/612 (96%), Gaps = 14/612 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttttctttgtcattcagagatgccattaagacattcaaaag----accagagagtt 56
           ||||||||||||||||||||||||||||||||||| |||||||||    |||||||||||
Sbjct: 705 attcttttctttgtcattcagagatgccattaagatattcaaaagacttaccagagagtt 646

                                                                       
Query: 57  ggagataattgtattttattcaattcaatatgatttttactttatattcacattactgga 116
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggagataattgtattttattccattcaatatgatttttactttatattcacattactgga 586

                                                                       
Query: 117 agtgggtgagcactttcttacccatggtcataatatcttctcttcttctctccctcatgc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agtgggtgagcactttcttacccatggtcataatatcttctcttcttctctccctcatgc 526

                                                                       
Query: 177 tgtccatggcatagtcagtcatgcagtaaaagatgtaaaaccattgcacatttttagtta 236
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtccatggcatagtcagccatgcagtaaaagatgtaaaaccattgcacatttttagtta 466

                                                                       
Query: 237 cattggaaaacgtgcttatagaacccattagtaattgtgaaaggtgctgagataatttct 296
           |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 465 cattggaaaatgtgcttatagaatccattagtaattgtgaaaggcgctgagataatttct 406

                                                                       
Query: 297 gggtgtcagaatcttagatcagctgaaaccatgatgattttgtaaaggtcattgtaaaca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggtgtcagaatcttagatcagctgaaaccatgatgattttgtaaaggtcattgtaaaca 346

                                                                       
Query: 357 tattgatgagtatgcacatgctgtgggccattgattatatctggtaagcaactttattgt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 345 tattgatgagtatgcacatgctgtgggccattgattatatctggtaagcaagtttattgt 286

                                                                       
Query: 417 attttcgggagtgctgtgagttcaaatgttttacaacattatctggtttaatctaatttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attttcgggagtgctgtgagttcaaatgttttacaacattatctggtttaatctaatttt 226

                                                                       
Query: 477 tttgttaccttgttttattgtcaatacacacacacacacacacacacacacacacacata 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 225 tttgttaccttgttttattgtcaatacacacacacacacacacacacacacacacacaca 166

                                                                       
Query: 537 tatatatatatatatatacttttaaaaagatcagtggttaagatcaaagttattaaatta 596
            |||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catatata----------cttttaaaaagatcagtggttaagatcaaagttattaaatta 116

                       
Query: 597 gttctagaagaa 608
           ||||||||||||
Sbjct: 115 gttctagaagaa 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1012
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1002
Effective search space:   599196
Effective search space used:   599196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)