BAC Information

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BAC

Clone NameMSMg01-087C01
Chromosome1 (Build37)
Map Location 80,958,922 - 80,959,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087C01.T7 (MSMg01no087_c01.b1)MSMg01-087C01.TJ (MSMg01no087_c01.g1)
ACCAG306246AG306247
length6631,177
length of high quality
(start - end)
397 (32 - 428)---
definitionCHROMAT_FILE: MSMg01no087_c01.b1 PHD_FILE: MSMg01no087_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:07 2005CHROMAT_FILE: MSMg01no087_c01.g1 PHD_FILE: MSMg01no087_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGAATTCCGTGGTTTTCCATGTAATTTGTGGTTAAGTAGTG
CATACTTTGAAAGCTTTTGTTGTGAGCTCAGAACTGACAGAGAAGTCTCT
GAAATCCGGGACAAATGACAATAAGGTTAAGAAAGTCTTTAGTACATATA
GTTGTACATATAGTGACAGAGATGACATCCTTTGCATGGGGCTTTTCTTT
AAACTGCTTTAACAGTTATATGTGGTAGGAGTTATAAAATTTCTTATTAT
CATATATATGTAAGTTAGGTCTGAATAACTTAAATAACTTGTTCAGGTTT
TAAGATGATAAAACTAATGCTTTTTCTTCTTTCTGGGGGGGGGCAGGGAA
GAGGAGAGTGTTCGGGTTAGGAGTATTTAAGTTTTTTTTTTCTTTTTTTT
GTGATGCTTACAATTCATGTTCTTTAAGCAATGCCAGGATGATTTACGGC
TGTCTGTTACCTAAAATTGTAGTGTACAACCCACCTCCATCTTTTTTTTT
TTTTGCCATTCCTCTTTTCCTCAAGTCTCCCTCCCCCTCCTTCTTCCCGA
ATGTCCAGGGGCACAGGTTCACCGAATCCCCTGACACCCATGTCTCTTTT
AGCCACCTCAATTGATTTTGCCCACCTCCTCGGAAAACTGAACTTCCTGG
GTCTATTCCCCCA
NNCCCCCCCCNNNNNNNCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCN
NCCCCCGGCCCCCCGTCCCCCGCCCGNNNNNNTGCGCACTAAGAGGAAGC
GAAAGCGGAGGCACAGGCGCCGAGATACAGTGAGGGGGGGAGGAGCGACG
CCCACACAGCTTTTCTCACAAAAAAGAGGGGCGCAGCAGAGGCAAACCGC
GGCTGGGCCGCCGACCGCCCGACGAGAAAACCGTGTTTCTGCCGCCCCCG
CACCCACGCCGCGCGCCGTCCGCCGGTGCCTTGCCCTACCGCTCCCACAT
GTTGACTATGTCCAAGCCTTATATCCGGTTTCCTTACGCCCAGCAGATGC
GGCCCGCGAGCGGCGCCACCGGGAGTGATCTTACGTCCGCAGTATAATGA
ACAATACATGCTACCCCATAAAATCACACCCCCACGACCCACCTAAATTC
CAACCAATAAACACACAGCTCATATAAACACACAATAATTAAGTACCACA
ACCACCACTTGTGCAGCCGCCCGCCCCACGATAGCCGTTAAGAGTCGCCG
CCCACCACAGCGTTGGCCCCAATTGCCCACTTACCAATCACACTCCCCAC
ACTCCCCCCAGCCCCCGCACACGGTATAATATTCTCACAGATGATGACCG
CCCGATCGCCCGAGCGTGGGACGCGGCGCATGAGTGCATAAAGTGTAAAA
TACCCACGAAAAAAAGTACGCACGCCGCCGGCTGTGCAAGTGCCGCCCCG
CCCAGCGCCGAGTCGTAAGAACGCCCCACCGGACACGTCGTAGTGACAAC
CGGACCGGGCCGTGCAACCGCCGCTAGCGAGGTGTCGCGTCCGCACGCGA
GAGTGAACGAACAAGGCACGCGCGCACATCCTCATAGATCACGTCCCGCC
CCCCTTACTGCGTACCCTTCGCGCCGGCGCACGCCATCACTCGACGTACC
CTATCTCTTAGGAAACTGCAGAGTNCGCACCGCCGCGGCGCGGCCGGCGA
GAGACCGCGCACCTCCGATAACGAGACAACGAAGGCATGAGAACGACGGC
GAGGAGTGCGCAGCCGAATGAAACAAGAGAGGTCGGGGAAGTAGGCGATG
GTCGCAAAGCAGATATGAGCACGACGGGTCGCGCGTTTCCTCTTTCTGTC
CGCCACACCCACCGCCATAGATAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_c01.b1 MSMg01no087_c01.b1 CHROMAT_FILE:
MSMg01no087_c01.b1 PHD_FILE: MSMg01no087_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:07 2005
         (397 letters)



>mm_chr1_80958722_80959521
          Length = 800

 Score =  739 bits (382), Expect = 0.0
 Identities = 395/400 (98%), Gaps = 3/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgtggttaagtagtgcatactttgaaagcttttgttgtgagctcagaactgacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgtggttaagtagtgcatactttgaaagcttttgttgtgagctcagaactgacaga 260

                                                                       
Query: 61  gaagtctctgaaatccgggacaaatgacaataaggttaagaaagtctttagtacatatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtctctgaaatccgggacaaatgacaataaggttaagaaagtctttagtacatatag 320

                                                                       
Query: 121 ttgtacatatagtgacagagatgacatcctttgcatggggcttttctttaaactgcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacatatagtgacagagatgacatcctttgcatggggcttttctttaaactgcttta 380

                                                                       
Query: 181 acagttatatgtggtaggagttataaaatttcttattatcatatatatgtaagttaggtc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 acagttatatgtggtaggagttataaaatttcttaatatcatatatatgtaagttaggtc 440

                                                                       
Query: 241 tgaataacttaaataacttgttcaggttttaagatgataaaactaatgctttttcttctt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgaataacttaaataacttgttcaggttttaagatgataaaaataatgctttttcttctt 500

                                                                       
Query: 301 tctggggg-ggggcagggaagaggagagtgttcgggttaggagtatttaagttttttttt 359
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgggggtggggcagggaagaggagagtgttcgggttaggagtatttaagttttttttt 560

                                                   
Query: 360 tc--ttttttttgtgatgcttacaattcatgttctttaag 397
           ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctttttttttgtgatgcttacaattcatgttctttaag 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 800
Length adjustment: 9
Effective length of query: 388
Effective length of database: 791
Effective search space:   306908
Effective search space used:   306908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)