BAC Information

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BAC

Clone NameMSMg01-087E01
Chromosome1 (Build37)
Map Location 75,952,168 - 76,063,413
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087E01.T7 (MSMg01no087_e01.b1)MSMg01-087E01.TJ (MSMg01no087_e01.g1)
ACCAG306338AG306339
length644682
length of high quality
(start - end)
422 (33 - 454)558 (54 - 611)
definitionCHROMAT_FILE: MSMg01no087_e01.b1 PHD_FILE: MSMg01no087_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:18 2005CHROMAT_FILE: MSMg01no087_e01.g1 PHD_FILE: MSMg01no087_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,952,168 - 75,952,589)(76,062,973 - 76,063,413)
sequence
ACGATCCGCGGAATTCTTTTAAATATATAAAACAATGCAAGTCTTCTCAT
GATCTTTTTTGTTGTTGTTGCTTGGTTTTTGAGAAAATAGTATTTTCTTA
AAAAATGTTAATGCTGTTGACCTAAAGTCTATTTGTATTTTAACATTTTC
TCAGGTTTAAGTCTTAATATGGTAAGGACTGATAGTTTGAGATGGGAGAT
GGAGACAAGAGACTCTTGGCTGCTCACAGGCCACTGGCCCGGTCTACTTA
GCAGTGACAAGAGACCCTCCCTGATTCAAATAATCCAGAAGGTGAGACTT
GATCCAGGTTGTTCTTTATCTCCCACATGTGTGCCATTGTATACATACAC
ACAGATACATGCATATGTACACACATGCAAAGATAAAAAAGATATATGTG
TATATAAATATATTTGCTTGAGTGTATGTATGTGTTTCATATACATACAG
ATACCCACAGAGGCCAGGAGAGGGCATCGGATCTCCTGGAAATGCAGTTC
CAGACAGGTATGGGTGCTAAGTACTGAGTACTGAGGTGCTGAGTACTGAT
TACTACACCTGAGTTTCCTGTCAGAGCAGCTCTTTATCTGCTAACCCATT
TCTCCAGCCCCCCTAAGAATTGTTCTTTTTTATAAAAGCTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGTCTTGCTCATGGTTTGGGGGACCACAGTTGATAATAGCAAGGACA
ACACACAGCAAGGACCACTGTAGGTTATGGCTGCAGGAAAACAGGGGCAG
GGCAGCTGATTCCATCAGGTCCCCAGCTAGGAAGCAGAGAGCTGGACTGA
TAAGAGGCAAGCCTACAACCTTCAAGGCACAACCCTACAATCTTTCATCT
ACCCATGATGCCCCAAATCCAAAAGGTTCAGAGCCTCCACAAACAGTGCC
AACAGCTAGGGACCAAGTGCTCAAATACGTGAGCCTAGAGGGGACTTGGC
ACACTAGAGCCAAAGCAACAGTGATGAGGGAAAGTGACCACGTTAATCTA
GGTTCCCCGCAAAGTGTCTGTCCAAAGTGTATGTGAAAAGAGGACATTGC
TGATGAATCCAATAGGAACAGACACACCACATACATAGAGCAAGCACAAC
ACATACAACACACAGTATGCATAACACTTCTGTATCCACACAACACAGAG
TGTGCTCAATGCATACAACAGCCTACACACAGCACATATCCCACAGAGGT
GTGTTGTTTGTTTGTTGATGCCATATGCATTCCACGTGGGCATCAGTCAA
AGTGGGAATCTGCTCCTCAGAATTCCTGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_e01.b1 MSMg01no087_e01.b1 CHROMAT_FILE:
MSMg01no087_e01.b1 PHD_FILE: MSMg01no087_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:18 2005
         (422 letters)



>mm_chr1_75951968_75952789
          Length = 822

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgcaagtcttctcatgatcttttttgttgttgttgcttggtttttgagaaaatagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgcaagtcttctcatgatcttttttgttgttgttgcttggtttttgagaaaatagta 260

                                                                       
Query: 61  ttttcttaaaaaatgttaatgctgttgacctaaagtctatttgtattttaacattttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ttttcttaaaaaatgttaatgctgttgacctaaagtctatttgtattttaacattttttc 320

                                                                       
Query: 121 aggtttaagtcttaatatggtaaggactgatagtttgagatgggagatggagacaagaga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aggtttaagtcttaatatggtaaggactgacagtttgagatgggagatggagacaagaga 380

                                                                       
Query: 181 ctcttggctgctcacaggccactggcccggtctacttagcagtgacaagagaccctccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttggctgctcacaggccactggcccggtctacttagcagtgacaagagaccctccct 440

                                                                       
Query: 241 gattcaaataatccagaaggtgagacttgatccaggttgttctttatctcccacatgtgt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gattcaaataatccagaaggtgagacttgatccaagttgttctttatctcccacatgtgt 500

                                                                       
Query: 301 gccattgtatacatacacacagatacatgcatatgtacacacatgcaaagataaaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccattgtatacatacacacagatacatgcatatgtacacacatgcaaagataaaaaaga 560

                                                                       
Query: 361 tatatgtgtatataaatatatttgcttgagtgtatgtatgtgtttcatatacatacagat 420
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtatgtgtatataaatgtatttgcttgagtgtatgtatgtgtttcatatacatacagat 620

             
Query: 421 ac 422
           ||
Sbjct: 621 ac 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no087_e01.g1 MSMg01no087_e01.g1 CHROMAT_FILE:
MSMg01no087_e01.g1 PHD_FILE: MSMg01no087_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:18 2005
         (558 letters)



>mm_chr1_76062456_76063413
          Length = 958

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                       
Query: 118 ccccagctaggaagcagagagctggactgataagaggcaagcctacaaccttcaaggcac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ccccagctaggaagcagagagctggactgataagaggcaagcctacaaccttcaaggcac 899

                                                                       
Query: 178 aaccctacaatctttcatctacccatgatgccccaaatccaaaaggttcagagcctccac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 aaccctacaatctttcatctacccatgatgccccaaatccaaaaggttcagagcctccac 839

                                                                       
Query: 238 aaacagtgccaacagctagggaccaagtgctcaaatacgtgagcctagaggggacttggc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaacagtgccaacagctagggaccaagtgctcaaatacgtgagcctagaggggacttggc 779

                                                                       
Query: 298 acactagagccaaagcaacagtgatgagggaaagtgaccacgttaatctaggttccccgc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acactagagccaaagcaacagtgatgagggaaagtgaccacgttaatctaggttccccgc 719

                                                                       
Query: 358 aaagtgtctgtccaaagtgtatgtgaaaagaggacattgctgatgaatccaataggaaca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaagtgtctgtccaaagtgtatgtgaaaagaggacattgctgatgaatccaataggaaca 659

                                                                       
Query: 418 gacacaccacatacatagagcaagcacaacacatacaacacacagtatgcataacacttc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gacacaccacatacatagagcaagcacaacacatacaacacacagtatgcataacacttc 599

                                                                       
Query: 478 tgtatccacacaacacagagtgtgctcaatgcatacaacagcctacacacagcacatatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtatccacacaacacagagtgtgctcaatgcatacaacagcctacacacagcacatatc 539

                                
Query: 538 ccacagaggtgtgttgtttgt 558
           |||||||||||||||||||||
Sbjct: 538 ccacagaggtgtgttgtttgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)