BAC Information

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BAC

Clone NameMSMg01-087P20
Chromosome1 (Build37)
Map Location 140,629,266 - 140,629,632
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087P20.T7 (MSMg01no087_p20.b1)MSMg01-087P20.TJ (MSMg01no087_p20.g1)
ACCAG306862AG306863
length744793
length of high quality
(start - end)
372 (35 - 406)65 (141 - 205)
definitionCHROMAT_FILE: MSMg01no087_p20.b1 PHD_FILE: MSMg01no087_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:18 2005CHROMAT_FILE: MSMg01no087_p20.g1 PHD_FILE: MSMg01no087_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGGTTCAGGATCCGCGGAATTCCCATAG
ACCTCAGCCTTTTTGACCAGGCCTCTGAGCACCAAAGTGCTTAGAATAAT
GGCTGACTAACGGCATCATGTATATACACATACGAAACAAGTGTTTCCCT
AGCTACACTCTCCTTCCCATTCTGTTGTAGCTTTATACACATGTAACTCT
CCCACCAAAAGCCATCATCCTTAAGGGTGAGAATTTACTAGGAAGCTCTG
AACAGTGTGTATGCCTACTATGGATTGACTATTTACAAGGAAAAATATGA
CCATTTATCGTATCTAAAATCACATACCTGTAGGAAAGAGGAGATGTCAG
TATGTGGTAATATTCTTGTTTTGCTGGTTATTTTCTTATGAATTAAAGAG
TATAAGTGTTCCGCTCAAGATAGAGGAGCATCAATGTAGTGCCCATAGCT
GACCTCTCTCTCACACAGTTAATAGAAAGGAAAGCACAGGGTACAGAAAC
TAAACCAGGATATATGGACTCTGACACAGAAATAAACTGGCTGTTGATTC
GCAAATGGTCATTAAGACCCTGATGGTTGGAAGCTTAAAGGATGAAAACC
TTCTCGAACGAATATTGCCTTGCGAATATCCCAGCTTGACTCACTTATTT
AGTGACCCCCTCTTTCAGGCTCCCTATAATTACCCTCTATGAACACTCTT
AATTTCTGTCATAACTTCCCTACCCTTTCCGATCCTATATAACC
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCGTGTGGTGATTATCACTAATTTAA
AAGCAGATAAATGGCTGGTTTTGCCTCCTACCAGAATTTCCAAAGGAGAG
AGCAAGACACAGCATCCACTCACACTATGTCCATGTCACAGGATGGGTCT
AGGCTCCCCAGATGCAAAGATTGACTAAATCTCTGCAGAGACAACTCCCA
TCCCCTCTCTAGGCTATTCTGAGGCTGTGCCCCCTGCATGTCTGTCTCTT
CTTGCAGATTCTCTTCTCTAGTACATTTTTTCTATACTTGTTCTACTCAA
GCAAGCAGCCTCTATTTCCTAATTCCCCCCCCCCCCCCCCCACGTGACTT
CATTAGTGGCTTCATTCCCCCCTTTTTCTAAAATNTATCAACAATGGGGG
GGGGGGGGGGGGATTTCTACTCTCATCTTCCACGGTATTTCCCACTTTCC
AAGTGCTCTCCTTTCTTTTCCACCTTTTCGTTTTTAATCTCCTCCCTGTC
GCTTCCTTCCTATTTCCCCTTTTTCCTTACCCTTCCTCCCTCCTTGTACC
TTTATTTCATTCACACTTATCCTGGTTTACCGTTTTTTTCCTTATCTCAT
TCCTTCCCTTTCTCCTTTGCTTTTCCCCTCCCCTTCCATCTCTATACCAT
ATCTCGCTTCTACTCCTTTTCCTCCGTCCCTTGCATTTTCCCCCTGTTTT
CGCCTCCTTTTTTCCTCCCCTTTTCTGTCCCTTTTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_p20.b1 MSMg01no087_p20.b1 CHROMAT_FILE:
MSMg01no087_p20.b1 PHD_FILE: MSMg01no087_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:18 2005
         (372 letters)



>mm_chr1_140629062_140629832
          Length = 771

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatagacctcagcctttttgaccaggcctctgagcaccaaagtgcttagaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattcccatagacctcagcctttttgaccaggcctctgagcaccaaagtgcttagaata 512

                                                                       
Query: 65  atggctgactaacggcatcatgtatatacacatacgaaacaagtgtttccctagctacac 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 511 atggctgactaacggcatcatgtatatacacatacgaaac-agtgtttccctagctacac 453

                                                                       
Query: 125 tctccttcccattctgttgtagctttatacacatgtaactctcccaccaaaagccatcat 184
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 452 tctctttcccattctgttgtagttttatacacatgtaactctcccaccaaaagccatcat 393

                                                                       
Query: 185 ccttaagggtgagaatttactaggaagctctgaacagtgtgtatgcctactatggattga 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ccttaaggttgagaatttactaggaagctctgaacagtgtgtatgcctactatggattga 333

                                                                       
Query: 245 ctatttacaaggaaaaatatgaccatttatcgtatctaaaatcacatacctgtaggaaag 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 332 gtatttacaaggaaaaatatgaccatttatcgtatctaaaatcacatacctgtgggaaag 273

                                                                       
Query: 305 aggagatgtcagtatgtggtaatattcttgttttgctggttattttcttatgaattaaag 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggagatgtcagtatgtggtattattcttgttttgctggttattttcttatgaattaaag 213

                   
Query: 365 agtataag 372
           ||||||||
Sbjct: 212 agtataag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space:   276606
Effective search space used:   276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)