Query= MSMg01no088_d01.b1 MSMg01no088_d01.b1 CHROMAT_FILE:
MSMg01no088_d01.b1 PHD_FILE: MSMg01no088_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:35 2005
(613 letters)
>mm_chr1_144781701_144782713
Length = 1013
Score = 1096 bits (567), Expect = 0.0
Identities = 601/613 (98%), Gaps = 3/613 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaagatcctgggtgtgctagagcttcttggagtg-taca--tcccctgggggc 60
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct: 201 ggaattctaagatcctgggtgtgctagagcttcttggagtggtacaagttccctgggggc 260
Query: 61 tgtggaactttccactgaggttggacccaaggtagacaagtgcagactggaaggaacctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggaactttccactgaggttggacccaaggtagacaagtgcagactggaaggaacctg 320
Query: 121 agccactgatcgggcagggttcctgtgtccctgtatcatgctggctctagtcactccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccactgatcgggcagggttcctgtgtccctgtatcatgctggctctagtcactccagg 380
Query: 181 tggtgttggaacagattttgtggtctactcaccagtgatcctaaggtcctgggtgcacta 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcgttggaacagattttgtggtctactcaccagtgatcctaaggtcctgggtgcacta 440
Query: 241 tagtgcctgggagttgagactcctctggggaccattggtttgtccgataaatttgggccc 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgcctgggagtagagactcctctggggaccattggtttgtccgataaatttgggccc 500
Query: 301 ttaaatagagttttaatttagctataatgtggtgtctcctcttaagaatattgtctttat 360
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 501 ttaaatagagttttaatttagctataatgtggtgtctcctgttaagagtattgtctttat 560
Query: 361 gttgacccctaattttctattttatgataaagatcatgaaaatgatgagtgacaatcaat 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gttgacccctaattttctattttatgataaagatcctgaaaatgatgagtgacaatcaat 620
Query: 421 tgtgtaagatgtatcagatgcctgcaggaaagagaccagcctcagtgctctgcttactaa 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tgtgtaagatgtatcagatgcctgcaggaaagagaccagcttcagtgctctgcttactaa 680
Query: 481 cttagcatttgcctgaattttgtatttgccttacataaactcagcccttttatgcattta 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttagcatttgcctgaatcttgtatttgccttacataaactcagcccttttatgcattta 740
Query: 541 accacatatattccttaaaatttttctccaagtgtgcaggagaaatttgttgatcgaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accacatatattccttaaaatttttctccaagtgtgcaggagaaatttgttgatcgaggt 800
Query: 601 aacttatgctata 613
|||||||||||||
Sbjct: 801 aacttatgctata 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_d01.g1 MSMg01no088_d01.g1 CHROMAT_FILE:
MSMg01no088_d01.g1 PHD_FILE: MSMg01no088_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:35 2005
(488 letters)
>mm_chr1_144928434_144929320
Length = 887
Score = 897 bits (464), Expect = 0.0
Identities = 482/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 1 gaagtgatggagttgtatatgtggtctgcctgcacttttgaagttggggcttttgaagta 60
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 687 gaagtgatggagttgtgtatgtggtctgcctgcgcttttgaagttggggcttttgaagta 628
Query: 61 aatgtttctgctattttccaggagctctgaagaggtaagaattaagatggaactttgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aatgtttctgctattttccaggagctctgaagaggtaagaattaagatggaactttgata 568
Query: 121 tgctggtggatatgtcaagtggcaagagaggcagttttggatcacagaaaaatgaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgctggtggatatgtcaagtggcaagagaggcagttttggatcacagaaaaatgaatcag 508
Query: 181 gctgcgggggtagtactgtggggctacagcatttgatggcaattactaaatattgcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 gctgcgggggtagtactgtggggctacagcatttgatggcaattactaagtattgcttgg 448
Query: 241 tttttgtacttcaaaggggaatatttgaagtatattcgtttttgaaataaaagagctgca 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 447 tttttgtacttcaaaggggaatatttgaagtatattcttttttgaaataaaagagctgca 388
Query: 301 ttaaaaaatcttatctttgggacatgttaatatgaacagaaataaaaccaatttaggtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttaaaaaatcttatctttgggacatgttaatatgaacagaaataaaaccaatttaggtac 328
Query: 361 ctttgttctttgaggctcccgtgtatcttagagagagcatttatattttatttcattttt 420
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctttgttctttgagactcc-gtgtatcttagagagagcatttatattttatttcattttt 269
Query: 421 tttcgaaataccaaatgagcagtatgacatctatatgaagaatttgaaatttctctaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttcgaaataccaaatgagcagtatgacatctatatgaagaatttgaaatttctctaaaa 209
Query: 481 cctttagg 488
||||||||
Sbjct: 208 cctttagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
