BAC Information

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BAC

Clone NameMSMg01-088G21
Chromosome1 (Build37)
Map Location 87,501,933 - 87,502,164
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088G21.T7 (MSMg01no088_g21.b1)MSMg01-088G21.TJ (MSMg01no088_g21.g1)
ACCAG307187AG307188
length699757
length of high quality
(start - end)
192 (120 - 311)232 (179 - 410)
definitionCHROMAT_FILE: MSMg01no088_g21.b1 PHD_FILE: MSMg01no088_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005CHROMAT_FILE: MSMg01no088_g21.g1 PHD_FILE: MSMg01no088_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCT
AGAATACCACTCAGGATTGCTAAATAGACAGATGATGAAATCATGTCTGA
GACCAGCTGTTTCACTAGCATTGTAGATGTGTCCTGGCTAGTTTGGCTGT
CAATTTGACATGCCTAAGAAGAGCAAACATCAATTGAAGAATTATGTATC
TCAGATAAACTATAGGCAATTCCGTGGGAGCATTTTCTTGATTATGGATT
CATATAGGAAATCTAAGCCCCCTGTGGGTGGTACCATCCCTAGAAATGGT
ATTCCGAAGTTGATTAATAATGGAAGTTGAATATGAGCCAAGGAGCAAGC
CTTATTCTCCGCCCCCTCGCTTCAGATCATCCCTCCTCATTTCTGTCTTG
AGTACCTGCCCCGCATTACCAATGTAATGGATTGTACGGTGCAAGCCAAA
TAATCCTTTCCTTCTATAGGTTGATTTTGCTCATGTTGCCCACCATACCA
GCCCAGGAACATACCCTCACCAGACCGCTGTTTCTCACCTTATACCTGAA
CCCCCCCTTCACCTCGCTTTGATGCCTAAGGCTCAACTTTGTTCCCTATC
ACACTGATGTCTAATCATGATCACATATTCTGACCTCCCAATTCCTTTTT
CCTTATCTTCCTTACGAAAACAATTTCTCCTCTGCCCACCCTTGTCCCG
CCCTTCCGTTCGGTTTTTNGCCTTGTTNGGGCCCCCCNCNNNTTTATTNN
NCCNTACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCGTGTGTCTGTCTTACCT
TCGCTAGCCTGAGTAGAGTTTAACACGTATTGATCTTTCCAAAGGATGTG
AGCATAATGCCCACTTCTTTTAATTCTATGGATTTCTACTTTAATTTCAT
TGAATCTTTGTCTTCACTGGGATGAAATCATTCCTCATAAGATTGTTCAT
TTATGCCTCTCTTAGCTTCCGACACATACAAAGCTGTATGTTTCCCCTTA
GCCACTGCCTTTGCTGTGTCTCATATTTAATAATTTTTAGACTTCAGTGC
TTTTTTAGTGTATTTTTACGCCCCACACCTTTGCTTGTCTTACCCCATTT
AAAAAAAATTACCTTCCCCCCATTTATAGAAAGTGTGCAGGTTGCCCCAT
TGTGTCTTTTTGAGATCAGAGTACAACTTTGGGGAGTTGGTTCTCTCCTA
CTATCATGCAGTTAGTTCTTAGGGCAGCAAGCTCATGTCCGCAAACTTGC
TGGTAAGGCCTGTATCATCTTATCCATCCTCCCAAATCATCTTTTATTTA
CCTTAGTTTCCGGCTTTAAATGTACCTAAGCTTCATAACTGGGCTATCTA
CCTCCTATCCACTTTTTTGACTTCCTTTTTTCCCTGAGAAATCTTTATCC
ATGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_g21.g1 MSMg01no088_g21.g1 CHROMAT_FILE:
MSMg01no088_g21.g1 PHD_FILE: MSMg01no088_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:54 2005
         (232 letters)



>mm_chr1_87501733_87502364
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatctttccaaaggatgtgagcataatgcccacttcttttaattctatggatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatctttccaaaggatgtgagcataatgcccacttcttttaattctatggatttcta 260

                                                                       
Query: 61  ctttaatttcattgaatctttgtcttcactgggatgaaatcattcctcataagattgttc 120
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 261 ctttaatttcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttc 320

                                                                       
Query: 121 atttatgcctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatgcctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgc 380

                                                               
Query: 181 ctttgctgtgtctcatatttaataatttttagacttcagtgcttttttagtg 232
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgctgtgtctcagatttaataatttttagacttcagtgcttttttagtg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)