Query= MSMg01no088_k04.b1 MSMg01no088_k04.b1 CHROMAT_FILE:
MSMg01no088_k04.b1 PHD_FILE: MSMg01no088_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:11 2005
(387 letters)
>mm_chr1_56120659_56121444
Length = 786
Score = 646 bits (334), Expect = 0.0
Identities = 373/386 (96%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 3 ttggaatgagcaaagtctctgacaatgaattctccatagatacatgtaatagggttgtca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttggaatgagcaaagtctctgacaatgaattctccatagatacatgtaatagggttgtca 527
Query: 63 aaggtttgaattccttggaagatcaggtaaaatgtccctt-ctcatgtagttttgcttac 121
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 526 aaggtttgaattccttggaagatcaggtaaaatgt-ccttcctcatgtagttttgcttac 468
Query: 122 ttcattgtttctacaacaatgtgtgaagaaaagactaacttatatgacattgaaatgcca 181
|||||||||||||||| |||||||||||||||| || ||||| |||||||||||| ||||
Sbjct: 467 ttcattgtttctacaataatgtgtgaagaaaagcct-acttagatgacattgaaacgcca 409
Query: 182 gtgcagcagtgcattaacgttgatctgcctctatccactggccctgatagtccatctctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtgcagcagtgcattaacgttgatctgcctctatccactggccctgatagtccatctctt 349
Query: 242 ttgtcactttcttcccttcctccagaaggcacctgcatgtcatactgggcttctcacaca 301
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgtcactttcttcgcttcctcctgaaggcacctgcatgtcatactgggcttctcacaca 289
Query: 302 cagcacttggagacctttgctctgtacttcgtcctagtgaaaatagaactgatccacatt 361
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 288 cagcacttggagacctttgttctgtactttgtcctagtgaaaatagaactgatccacatt 229
Query: 362 atacaccattaaaccttctctcgcct 387
||| |||||||||| |||||||||||
Sbjct: 228 ataaaccattaaactttctctcgcct 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space: 293706
Effective search space used: 293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_k04.g1 MSMg01no088_k04.g1 CHROMAT_FILE:
MSMg01no088_k04.g1 PHD_FILE: MSMg01no088_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:11 2005
(525 letters)
>mm_chr1_55971751_55972675
Length = 925
Score = 984 bits (509), Expect = 0.0
Identities = 521/525 (99%)
Strand = Plus / Plus
Query: 1 ttcatagtttgttctgaaattgctataggaagatcattcggggtctaaaatacacacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatagtttgttctgaaattgctataggaagatcattcggggtctaaaatacacacaat 260
Query: 61 ttatttttccaccttcaatttgcaagaatttaatggctttcctaactagtaggtggttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttttccaccttcaatttgcaagaatttaatggctttcctaactagtaggtggttgg 320
Query: 121 agatatgctttatattgaagagaaaactacttcggatcataaaaatgatcagaagtgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatatgctttatattgaagagaaaactacttcggatcataaaaatgatcagaagtgagt 380
Query: 181 ggatcagaattttaaacctccagcgatttccggagtgtgttagaagattgcccaagtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcagaattttaaacctccagcgatttccggagtgtgttagaagattgcccaagtatc 440
Query: 241 atactatagtttgtgcttacttgctgtgctataagaagctgctggcttcaaaatatcaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactatagtttgtgcttacttgctgtgctataagaagctgctggcttcaaaatatcaac 500
Query: 301 aggttggtttataatactgtatttctatgtttttcagttttcttttttttttaatcacct 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggttggtttataatattgtatttctatgtttttcagttttcttttttttttaatcacct 560
Query: 361 ccaataacatcagaaactagtataacggacagctcctgtacagaggcaatgctgggccag 420
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaataacgtcaggaactagtataacggacagctcctgtacagaggcaatgctgggccag 620
Query: 421 ctgctaactgacttgtagggcaatttaggttgcttgtatgtttgtttttttaatagcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgctaactgacttgtagggcaatttaggttgcttgtatgtttgtttttttaatagcttc 680
Query: 481 caacgagctcctttcttctaagtttgaagttttcttcatatctta 525
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 caacgagctccttccttctaagtttgaagttttcttcatatctta 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
