NTTTTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTCTATAATTTNCNNNCNNTAAANANTCNNATTTCAAAANGAT
CCNCNNAATTCCNNATTTTCANACAACAAGNCTTGGAAAAAATCTATCTA
TCCATCTGGCTATCTGGCGGGCTATCNATCTATCNANCTATCNANCAATC
NANCTATCTATCTATCTATCNANCTATCTATCCATCNNNCCATCNANCNA
TCTATCTACCCANCNACCNNTTTATTNANNNNATCTATTNNTGGGTCNNN
CCACNACCNANNCNNCCNANNNCNNCCNTCNNNCCACCCNNCNTTTANNC
CNNCNANCNNCCANCNNCNCCCTTTTTCCCNNNNNNCNNNNNNNNNNNNC
CCTTTNNNNNCCCATTNNNNNCCCCCCCCCCCNCNNNNCCNNNNNNNTTT
TNNNTTTTTNTTTTTTTTTCCCCTNANAAANNAAAANNNNNNNNNNNNNN
NNNNCCCCNNCNTTTTTNNNNNNCAATANNNNNNNNNNNNNNNCNNNNNC
NNNNCNNCCNNNNNTTTTTNNNTTTNCNNNNNNNNNNATTTTATTTTCCT
CNCNNNNNANNNNNCCNNCNTNNNCNCNNCCCCCANNNCCCCNNCNNNNA
ANNNNNNNCNNNCCNCCTTTTNTTTTCTTCCAAATTTATCCTCAAACTNA
NCCAAANNCATAAANNNNNACACCAAAATCCCANNATCCCCNNNNNTCCC
NNNNTTNAAAACCCTTTTTTCGGGCTTTACAAGCTACCACNGGGGNAGTT
CGGGNAGTGGAGGTTNNGGGCGNTTNGGGGTTGTNGNTTTNNG

TGGCGCCGCCTGTCGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTAGTCTGACTTGGGTACACATTGCTGAGTAGGAGGGACAGGAGGTGTA
GTCAGAGGTGGTGGGTTAGAGTTGACACCTTTAATTTGAAAATAATGAAA
AAGGCTATTCTATTCTATGAAATACTCTTTGTTTTCTATAATTTTGTGAC
CATAGAACCAGTTCTTTACATATGCTCATATCAGCTTGATACAGAAACAA
CTCAAAGTTGACCTTCTTTTTCCTGGCTTCCTGGCTCAAATCTCTCTGTT
ATAACCAGTCAATACTCATGTGTGAGAAAGATGACAACTGAGGGACCAAC
TAATTCTTAGTTGGGCAACCTTTGTCCAGGAGATAAAGGATGACCGGCCA
GGGAAGAATAATTAGAGGAAGGCCAAACTCTGGAGAACATCAGCTTTTAG
AAACGGAACATGGAGAACTTGGCATGGATGAACTGGAGAATCATAGAGAA
GCAGGGACTTTTAATGTTCTGTTACTGTGAAGAGACACCATGATCAAAGC
TACTCTTATAAAGGAGAATATTCAATTGATGCTTGCTTATAGTTTCAGTC
CACTATCAACATGCCAGAAATTCAGGCAGCATGTAAGCAGACATGATGGT
GGAGGAGAATCCTTACATCTGAATCCACATG

Query= MSMg01no088_k08.g1 MSMg01no088_k08.g1 CHROMAT_FILE:
MSMg01no088_k08.g1 PHD_FILE: MSMg01no088_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:12 2005
         (436 letters)



>mm_chr1_10977281_10978124
          Length = 844

 Score =  661 bits (342), Expect = 0.0
 Identities = 416/446 (93%), Gaps = 12/446 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtctgacttgggtacacattgctgagtaggagggacaggaggtgtagtcagaggtggt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tagtctgacttgggtacacattgctgagtaggagggataggaggtgtagtcagaggtggt 260

                                                                       
Query: 61  gggttagagttgac----acctttaatttgaaaataatgaaaaagg-----ctattctat 111
           ||||||||||||||    |||||||| ||||||||| |||||||||     |||||||||
Sbjct: 261 gggttagagttgacacttacctttaaattgaaaatagtgaaaaaggctatcctattctat 320

                                                                       
Query: 112 tctatgaaatactctttgttttctataattttgtgaccatagaaccagttctttacatat 171
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  ||
Sbjct: 321 tctatgaaatactctttattttgtataattttgtgaccatagaaccagttctttac--at 378

                                                                       
Query: 172 gctcatatcagcttgatacagaaacaactcaaagttgaccttctttttcctggcttcctg 231
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 379 gctcatatcagcttgatacagaaacaactcaaagttgaccttcttcttcctggcttcctg 438

                                                                       
Query: 232 gctcaaatctc-tctgttataaccagtcaatactcatgtgtgagaaagatgacaactgag 290
           ||||||||||| ||||  ||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 439 gctcaaatctcatctgggataaccagtcaatactcatgtgtgagaaagatggcaacggag 498

                                                                       
Query: 291 ggaccaactaattcttagttgggcaacctttgtccaggagataaaggatgaccggccagg 350
           ||||||||||| ||| ||| |||||||||||||||||||||||||||||||  |||||||
Sbjct: 499 ggaccaactaagtctcagtggggcaacctttgtccaggagataaaggatgaatggccagg 558

                                                                       
Query: 351 gaagaataattagaggaaggccaaactctggagaacatcagcttttagaaacggaacatg 410
           |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 559 gaagaataattagaggaagggcaaactctagagaacatcagcttttagaaatggaacatg 618

                                     
Query: 411 gagaacttggcatggatgaactggag 436
           ||||||||||||||||||||||||||
Sbjct: 619 gagaacttggcatggatgaactggag 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 844
Length adjustment: 9
Effective length of query: 427
Effective length of database: 835
Effective search space:   356545
Effective search space used:   356545
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)