GCGGCCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCATAATT
GCAGTTATTACGGCTTAACCCTCCTCTCGGTGCCTCCCAGCTCAAGGAGA
ATAGTAACACGGAGAAGAAAGTTACATAACTTAGAGTTGCATTAAAGTCA
GAGATAAAGAATATGTAAAATACCTAGGTGGTAATGGTGCCCACCTCTAA
GCTCAGCACTTGGGAGGCAGAGGCAGAGGCAGGTAGATCCTGTGAGTTTG
AGGCCAGCCTGGTGTACAGAGCAAGTTCCAGAATAGCCAGGACTACATAG
ATAAACATTGTGTAGAGCCTGCCACCAAAATAGAATATGTAAAATTATGG
TAATAATCATAACTTAGATAAATCAACAGCATCCTAGAGTTCTTTCTGCT
TGCATATTTTTAATATAATGGGAACAAGTCTACCATGGACACCTCTCTTT
GGCATTGCACTTCAGATTGTTTCCCACTACTGATTTAAGTGACATAGATT
CTTTGTTGTTCATTTTTGAGATTGCATTTTAACTACTATATTTTCCCCCT
CCCCTTTTCTCCCTCCAAGCCCTCCCCTATAGCTCTCCCCATTCTTCTTT
AAATTCATGCCCCCCATTTTTCATCGATTGTTATTGTAGACACATAGATT
CTTTATGAAAGGATGAAAAAATTTTGTTTCAGTTTACTAAATGTACATTC
TACTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCGCGGA
ATTCTCTATGTGGGTACTGGAGAAAACACCGTTGGCCTAGTTAATGGCTA
TAACTCTCTTGTCTGATGTTGGGTGCAAAATCACTTTGATAGACAGAAGA
CTTTGAAAGACATGAGTAAGCTGGTAGCTAGAGTGAAATTTCTAAGGAGA
TGCTGCTAACATGTGTTCTCATATCTGACTGCAGCTGAAATGTCTTTCTC
TAAATGTGTGCAGAACAGTAGCATGCGGGCTTCCAGGTTCCTTTAGCTTA
AGCTTACACTGCCATCCTCTTTCCTTTCCTTACTGTTTTCTTGTTTGAGT
TCTCTTCAATGGTCAGCTCCCAAGCTCCTGGTAGTGTTCACTGTACATCA
CCTTGATTAAGCCCTTAAGTAGTCGAGTAACCTCCCCAATTCACACCCTA
TTGCTATATGTAAGACTTCCCCAATTTTTATTCATTGGTTATGAATATTC
TTTACAAAGCTGCTTGTAACTTAACTATAATACCGGTGAAGAAAAACCAA
TACTCATTTATCCAACCTAACACTTGTAAGAATTGCCTATTTAAATTGTG
TGCAAATGCCTTAACAAATAATGAACTAATTTTTTAAGGCACAGAAAATT
AAATACTACACACACCAAAATTGAATTTTGGTGCATTCAGGACTATATAC

Query= MSMg01no088_p09.b1 MSMg01no088_p09.b1 CHROMAT_FILE:
MSMg01no088_p09.b1 PHD_FILE: MSMg01no088_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:36 2005
         (511 letters)



>mm_chr1_178020534_178021444
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaagaaagttacataacttagagttgcattaaagtcagagataaagaatatgtaaaat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaagaaagttacaaaacttagagttgcattaaagtcagagataaagaatatgtaaaat 260

                                                                       
Query: 61  acctaggtggtaatggtgcccacctctaagctcagcacttgggaggcagaggcagaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaggtggtaatggtgcccacctctaagctcagcacttgggaggcagaggcagaggca 320

                                                                       
Query: 121 ggtagatcctgtgagtttgaggccagcctggtgtacagagcaagttccagaatagccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagatcctgtgagtttgaggccagcctggtgtacagagcaagttccagaatagccagg 380

                                                                       
Query: 181 actacatagataaacattgtgtagagcctgccaccaaaatagaatatgtaaaattatggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 actacatagataaacattgtgtagagcctgccaccaaaatagaatatgtaaaatgatggt 440

                                                                       
Query: 241 aataatcataacttagataaatcaacagcatcctagagttctttctgcttgcatattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aataatcataacttagataaatcaacagcatcctagagttctttctgcttgtatattttt 500

                                                                       
Query: 301 aatataatgggaacaagtctaccatggacacctctctttggcattgcacttcagattgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatataatgggaacaagtctaccatggacacctctctttggcattgcacttcagattgtt 560

                                                                       
Query: 361 tcccactactgatttaagtgacatagattctttgttgttcatttttgagattgcatttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccactactgatttaagtgacatagattctttgttgttcatttttgagattgcatttta 620

                                                                       
Query: 421 actactatattttccccctccccttttctccctccaagccctcccctatagctctcccca 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actactatatttcccccctccccttttctccctccaagccctcccctatagctctcccca 680

                                          
Query: 481 ttcttctttaaattcatgccccccatttttc 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 ttcttctttaaattcatgccccccatttttc 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no088_p09.g1 MSMg01no088_p09.g1 CHROMAT_FILE:
MSMg01no088_p09.g1 PHD_FILE: MSMg01no088_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:36 2005
         (557 letters)



>mm_chr1_178139073_178140029
          Length = 957

 Score = 1002 bits (518), Expect = 0.0
 Identities = 545/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttctctatgtgggtactggagaaaacaccgttggcctagttaatggctataactctcttg 63
           |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 757 ttctctatgtggatactggagaaaacaacgttgacctagttaatggctataactctcttg 698

                                                                       
Query: 64  tctgatgttgggtgcaaaatcactttgatagacagaagactttgaaagacatgagtaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tctgatgttgggtgcaaaatcactttgatagacagaagactttgaaagacatgagtaagc 638

                                                                       
Query: 124 tggtagctagagtgaaatttctaaggagatgctgctaacatgtgttctcatatctgactg 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 637 tggtagctagagtgaaatttctaaggagatgctgctaacatgtgtcctcatctctgactg 578

                                                                       
Query: 184 cagctgaaatgtctttctctaaatgtgtgcagaacagtagcatgcgggcttccaggttcc 243
           ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 577 cagctgaaatgtctttctctaaatgtgcgcagagcagtagcatgcgggcgtccaggttcc 518

                                                                       
Query: 244 tttagcttaagcttacactgccatcctctttcctttccttactgttttcttgtttgagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttagcttaagcttacactgccatcctctttcctttccttactgttttcttgtttgagtt 458

                                                                       
Query: 304 ctcttcaatggtcagctcccaagctcctggtagtgttcactgtacatcaccttgattaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcttcaatggtcagctcccaagctcctggtagtgttcactgtacatcaccttgattaag 398

                                                                       
Query: 364 cccttaagtagtcgagtaacctccccaattcacaccctattgctatatgtaagacttccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cccttaagtagtcgagtaacctccccaattcacaccctattgctatatgtaagacttccc 338

                                                                       
Query: 424 caatttttattcattggttatgaatattctttacaaagctgcttgtaacttaactataat 483
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caatttttattcattggttgtgaatattctttacaaagctgcttgtaacttaactataat 278

                                                                       
Query: 484 accggtgaagaaaaaccaatactcatttatccaacctaacacttgtaagaattgcctatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 accggtgaagaaaaaccaatactcatttatccaacctaacacttgtaagaattgcctatt 218

                         
Query: 544 taaattgtgtgcaa 557
           ||||||||||||||
Sbjct: 217 taaattgtgtgcaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)