BAC Information

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BAC

Clone NameMSMg01-089A16
Chromosome1 (Build37)
Map Location 72,786,571 - 72,786,860
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A16.T7 (MSMg01no089_a16.b1)MSMg01-089A16.TJ (MSMg01no089_a16.g1)
ACCAG307642AG307643
length701685
length of high quality
(start - end)
274 (33 - 306)291 (55 - 345)
definitionCHROMAT_FILE: MSMg01no089_a16.b1 PHD_FILE: MSMg01no089_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:43 2005CHROMAT_FILE: MSMg01no089_a16.g1 PHD_FILE: MSMg01no089_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCCTGCTT
CTCCCAATCCAAAGCATTTATTATTTTAAAGATTTATTTGTGTGTCTTAT
GTATGAGTGTTCTTTCTCCCTGATGTATGCCTGCGTATCAGAAGAGGTCA
TCAGATCCCATTATAGATGGTTGTGAGCTGCCATGTGGTTGCTAGGAACT
GAACTCTGAACCTCTGGAAGGGCAGCCAGTGCTCTTAACCACTGAGCCAT
CTCTCCAGTCCATTACTACTACAGCAATGGTGTGTGTGTGTGTGCGTGTG
TGAGGGTTTTTTTTTCTCCCACGCTCCCCCTAACAACTAAAATTCTTTTT
TTTCCCCCCCCCCCCCCTTCTTTTTATTTTTTAATTTTTTTCTACTTATC
CCCCTCCCCTAAATACATTTTTTCTCTCCTTTTGTCCGTTTCTCTCTTTT
CCTCCTTATCCCTCTATTTTCACCTCCTCCTTCTCCTCCATTTCCTTCCT
TCCTCCCCCTCTTCCTTCCCTTTTTTTTCCTTTCCCTTTTTCTTTTTCTT
TCCCCCCCCCTTACCTTTCCCCCTTCCCCCTTTCCCTTCCCCTATCTCCC
CTTTTTCTTCTACCTTTTTTTTTACTCCCTTCTTCCCTTTCCTCATCCCT
TTTTCCCTTTTTTCCCCCTTTTTTTTTCCTTTCCTTCTTCCTTCTCCCCC
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCAGCTCTCTGGGTCCTGCCCAAATACAAGGAATGTGCCAGAGGC
AAGGGAGGTTCAGAGGAAGCGCCAGCTTGGGTCTAACCAATATGCTTTCC
TACCTGGCCCTGCAGCCAGGAATTTGAGCAGGACAAAAGATAGAGGGGGC
CTGGAGAAGTGCAGAAGTTTCTAGAAACTGAGGAACAGCCTCTGAGAAGA
TGAAGGAGTAGCAGCTGCATCTGAATGGAGATGCAGCACGACTGTACCTA
AGGATGGCGAAGACCTTGGGAGGAAGTGGCAGAGGTGGACAGGTCCCCAG
AGCCACTCCTGAAAATCAGAAATAGGGGAAGACCTTGGAAGTCTTGTCCT
ACATAGACTAGGATACCACATAAGGAGGCCTGTAATATTTCCCACAAAAA
TGGACCCCCAGAGCTCACTCCGCACAGTCACGTTTTAGACCAGGACATGC
TTTAGGATCTGACCTATTCCAGCATTTTGAGAGGCATAGGCTAAAGGATT
CCTCCAAATTTGAATCAGCCTGGTCTACTCAGCATGCTCCAGGTCAGCCT
GCTCTATATGGCACGACCCTGTCCTTCCATTTAATTTTTTATCCAGGAAC
AGAGAAGATCCGCATCCGTAACTCCTAGCCGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a16.g1 MSMg01no089_a16.g1 CHROMAT_FILE:
MSMg01no089_a16.g1 PHD_FILE: MSMg01no089_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:43 2005
         (291 letters)



>mm_chr1_72786371_72787062
          Length = 692

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagctctctgggtcctgcccaaatacaaggaatgtgccagaggcaagggaggttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tccagctctctgggtcctgcccaaatacaaggaatgtgccagaggcaagggaggttcgga 260

                                                                       
Query: 61  ggaagcgccagcttgggtctaaccaatatgctttcctacctgg-ccctgcagccaggaat 119
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 261 ggaagcgccagcttgggtctaaccaatatgctttcctacctggcccctgcagtcaggaat 320

                                                                       
Query: 120 ttgagcaggacaaaagatagagggggcctggagaagtgcagaagtttctagaaactgagg 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagcaggacaaaagaaagagggggcctggagaagtgcagaagtttctagaaactgagg 380

                                                                       
Query: 180 aacagcctctgagaagatgaaggagtagcagctgcatctgaatggagatgcagcacgact 239
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 381 aacagcctctgagaagatgaaggagtagcaactgcatctgaatggagatgcagcacaact 440

                                                             
Query: 240 gtacctaaggatggcgaagaccttgggaggaagtggcagaggtggacagg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacctaaggatggcgaagaccttgggaggaagtggcagaggtggacagg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)